Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02217 ATGCCGAAAGCCAAATCCGACTCCAAAGCCGCTGATAGCCGGTTGAAACGCAAAGGCGCTGGAACTGGAAGGAAGCAGACGAAGAAAGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCCAGTGCTTTCTTCGTTTTCATGGCTGATTTTAGAGAACAGTATAAGAAGGATCATCCTAACAACAAATCTGTTGCCGCTGTTGGAAAAGCTTGCGGTGAGGAATGGAAATCCTTGTCTGAAGAGGAGAAGGCTCCTTATGTTGATAGGGCTTTGAAGAAGAAAGAGGAGTATGAGATAACTCTTAAGGCCTATAATAAGAAACTGGAGGGGAAAGATGATGAAGAGGGTTCTGACAAGTCAAAATCTGAAGTCAATGATGAGGATGAAGATGAGGAGGATGAGGAGGATGAAGATGATGATTAA 426 0.4437 MPKAKSDSKAADSRLKRKGAGTGRKQTKKAAKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLKAYNKKLEGKDDEEGSDKSKSEVNDEDEDEEDEEDEDDD 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02217 141 Coils Coil 88 115 - -
Vifa4g02217 141 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Vifa4g02217 141 CDD HMG-box_AtHMGB1-like 38 98 - -
Vifa4g02217 141 MobiDBLite consensus disorder prediction 104 141 - -
Vifa4g02217 141 MobiDBLite consensus disorder prediction 1 44 - -
Vifa4g02217 141 Gene3D High mobility group box domain 21 123 IPR036910 -
Vifa4g02217 141 MobiDBLite consensus disorder prediction 104 124 - -
Vifa4g02217 141 MobiDBLite consensus disorder prediction 1 19 - -
Vifa4g02217 141 MobiDBLite consensus disorder prediction 125 141 - -
Vifa4g02217 141 SUPERFAMILY HMG-box 28 109 IPR036910 -
Vifa4g02217 141 SMART hmgende2 36 107 IPR009071 -
Vifa4g02217 141 PRINTS High mobility group (HMG1/HMG2) protein signature 71 90 - -
Vifa4g02217 141 PRINTS High mobility group (HMG1/HMG2) protein signature 3 23 - -
Vifa4g02217 141 PRINTS High mobility group (HMG1/HMG2) protein signature 90 110 - -
Vifa4g02217 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 137 IPR031061 -
Vifa4g02217 141 Pfam HMG (high mobility group) box 37 106 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02217 Vifa-Chr4 677012616 677013639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02217 33 121 ARID Transcription Factor Family AT1G76110 34.831 1.89e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vifa4g02217 HMG_box 3.8e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02217 K25507 - gmx:100499992 204.912