Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02208 ATGTCGTGTTCTTCTTCATCTGCATCGGAAGATGATGATGAGGGCTTCGATTCTTACCGGAAAGGTGGTTACCATGCTGTCAGGGTCGGCGATCAGTTCGCCGGTGGTCGGTATATAGCTCAGAGGAAATTGGGTTGGGGTCAGTTTTCAACCGTTTGGCTTGCTTACGACACTACAACCTCTGGATATGTTGCTCTCAAGATTCAAAAAAGTGCGGCGCAGTTTGTTCAAGCTGCTCTTCACGAGATAGACGTTCTTTCATCCATTGCGGATGGTGCTCCGTCAAATTCAAAGTTTGTTGTTCAATTGATTGACCAGTTTAAGCACACGGGTCCAAACGGCCAGCACCAGTGCATGGTGCTTGAGTTTCTTGGAGACAGCTTGCTTCGTCTAGTCAAATACAATCGTTACAAAGGTCTTCCGTTGAATAAAGTCAGGGAGATTTGTCGATGCATTTTGATTGGCTTGGATTACTTGCATAGAGAACACGGTATTATCCACACAGACCTAAAACTGGAAAATGTTCTTTTGGCTTCTACCATTGATCCTGCCAAAGACCCTGTTAGATCAGGAGTCTGTCCGATTATAGAGAGGCCAGAGGTAAACATAAACGGCGCCGTTACTAGTCTTATTGAGAAAAAGTTGAAAAGGAGAGCGAGGAGGGCGGTAGCTAAAATATCTGGACAAAGAGCTTCGATGGGAGGAATGGGGGAAACTCCGAAATCTGAGAGAAGAAATATTCATGGCATTGATGTTAGATGCAAAGTGGTCGATTTTGGAAATGCTTGTTGGGCCGATAAGCCATTTGCGGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTTATACTCCAAGCTGGCTATTCGTTCTCCGTCGACATGTGGTCTTTCGCTTGTATTGCTTTTGAGCTCGCCACTGGTGATATGTTGTTTACTCCGAAGGTTGGACAAGGTTTTAGCGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGAAAGGTTGCTACTGGAGGAGCGAAATCTAAGGATTTCTTTGACAGACACGGCGATCTGAAAAGGATTCGAAGGCTAAAATTTTGGCCACTAAACAAACTATTGATTGAAAGATACACATTTTCAGAGAGTGACGCTCATGAGTTTTCGGAGTTTCTCTTACCTCTTCTTGATTTTGCGCCCGAGAAGCGACCAACTGCGCAGCAGTGCCTACAACTCCCGTGGCTCGCTGGAAAGGACTCAGTTCCAAGTGATGTGAGAAATGAAACTAGTGTTGAAAAAGTGGATGTTGGAATAAGCAACCTTAAAATCAGGGTGGGGAAGTGA 1341 0.4526 MSCSSSSASEDDDEGFDSYRKGGYHAVRVGDQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSGYVALKIQKSAAQFVQAALHEIDVLSSIADGAPSNSKFVVQLIDQFKHTGPNGQHQCMVLEFLGDSLLRLVKYNRYKGLPLNKVREICRCILIGLDYLHREHGIIHTDLKLENVLLASTIDPAKDPVRSGVCPIIERPEVNINGAVTSLIEKKLKRRARRAVAKISGQRASMGGMGETPKSERRNIHGIDVRCKVVDFGNACWADKPFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKVATGGAKSKDFFDRHGDLKRIRRLKFWPLNKLLIERYTFSESDAHEFSEFLLPLLDFAPEKRPTAQQCLQLPWLAGKDSVPSDVRNETSVEKVDVGISNLKIRVGK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02208 446 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Vifa4g02208 446 ProSiteProfiles Protein kinase domain profile. 38 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02208 446 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 239 421 - -
Vifa4g02208 446 Pfam Protein kinase domain 39 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02208 446 Pfam Protein kinase domain 253 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02208 446 Gene3D Transferase(Phosphotransferase) domain 1 92 414 - -
Vifa4g02208 446 SUPERFAMILY Protein kinase-like (PK-like) 32 419 IPR011009 -
Vifa4g02208 446 CDD STKc_SRPK 27 414 - -
Vifa4g02208 446 FunFam Protein kinase superfamily protein 24 123 - -
Vifa4g02208 446 FunFam Serine/threonine-protein kinase SRPK 115 414 - -
Vifa4g02208 446 SMART serkin_6 38 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02208 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vifa4g02208 446 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02208 Vifa-Chr4 674771127 674773558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02208 4 429 EF-hand Containing Proteins AT5G22840 49.582 5.20e-164 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vifa4g02208 Pkinase 5.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02208 K08832 - gmx:100811724 758.829