Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02204 ATGATTAGAGTTTGGCTTGTGCTGTTGTTGATGGCTCTGCCCAATTTGTTGATCTCTTCTGCTGCGGTTGGTTTGGATAATTCGACAGTACCGGAGTCTTTAAATATTGGGGTTCTCTACTCTTTCAATACTAGTGTTGGTAGAATGGTGAAAATTGCCGTAGAAACTGCGGTTAACGATATAAATTCAGATTCTTCTATTCTTGGTAAAACTAAGTTGAAGCTCTCGCTGCAAGAAGATTCAAAATACCGAGGCTTTTTGAGCATTGCTGAAGCGTTGCAGCTCATGGCGACACACACTGTGGCCATTATCGGTCCGCAGACGTCTACAACAGCTCATGTCATATCTCATATAGCAAATGAGCTTCATGTTCCTCTGCTATCGTTTACAGCTACAGATCCTACTCTTTCCTCGCTTCAATTCCCGTTCTTCATTAGAACTGCTTTCAATGACATTTTTCAAATGACTGCAATAGCAGACATGGTTAGCCACTATGGTTGGAGAGAGGTTATCGTAGTATACGGTGATGATGACCATGGGAGGAACGGAATCGGTGCGTTAGCGGATAAGCTAGCTGAGAGACGTTGCAAGATATCGTTTAAAGCACCGATGACTCCTGATGCAAAGAGGGAGGAGATTACTGATGTGCTTGTTCAGGTGGCTTTGGCAGAATCTCGGGTTATAGTTCTTCACACAAGTACTTCTTGGGGTCCAAAAGTGTTGAGTGTTGCAAAGTCTCTTGGAATGATGCAAAATGGTTATGTATGGATTGCTACTACTTTTCTCACGTCTTATATCGACATAGATAGTCCACTCTCTTCCGATGAAATGGATAACATTCAAGGAGTTATTACACTTAGAATGTACATACCAGATTCGAAGCTCAAAAGATCGTTTGTTTCTAGGTGGACGAATTTGACTAGAGGAAAGGAGGGAAACGGTCCTCTTGGTTTGAGCACTTACGGTATCTTTGCATATGATACTGTTTATGTGCTTGCTCGCGCCCTTGATACATTCTTGAAACAAGGGAACCAAATTACATTTTCGCATGATCCGAAGATATCTGAATTACGTGGAGACAGCTTGCATCTAGATGCAGTGAAAATCTTCAATGAAGGAAACCTACTGTGTAAAAGTATTTATGCGGTTAACATGACTGGTGTAATGGGTCCATTCAGGTATACTCCTGACGGAAACCTTGCTAATCCAGCATATGAGATCATCAATGTGATCGGGTCAGGGACTCGCAGGATCGCTACTCACTGTGTTTTGGCCGGGAGAAACAACCCAAACACCTCGCGGTTGGGTTTTTCCAAGCAATGGAAAGCTGTTAAGAATTGGAGTACCGAAAAGGTAAACTTGTTACCCTATGCTGTCCCCTATAAATTTGTTCCGTACGGTGATGGTCAAAACAATCCTAGTAACACTGAGCTTGTGCGTCTGATCACTGCCGGTGTTTTTGATGCTGCAGTAGGAGACATTACAATTACAACAGAGAGAACAAAGATGGTGGATTTTACTCAGCCGTATACCGAGTCTGGTCTAGTGGTCGTAGCATCGGTTAAGAAGACGGATTCCAATGCTTGGGCATTTTTGACACCATTTACACCAATGATGTGGACTGTAACAGCTATCTTTTTCCTACTAGTTGGTGCAGTTGTCTGGATTCTAGAACATAGACTAAATGATGATTTTAGGGGACCTCCTAAAAAACAAGTAGCCACAATTTTGTGGTTTACTTTTTCAACTATGTTCTTCGCTCACAGGGAAAACACAGTGAGCACTCTTGGTCGATTTGTGCTGCTTATATGGCTATTTGTGGTTCTAATAATTAACTCGAGTTACACGGCAAGCTTGACTTCGATCCTCACAGTGCAGCAACTTTCTTCACCTATTAAAGGCATTGAAAGTTTAGTAAATATGAAAGAGCCTATTGGTTACTTGCAGGGCTCTTTTGCCCGATCCTATTTGATTGACGAAATCGGTATTCATGAATCCAGACTAGTTCCTTTAAAAACACCAGAAGAAACTGCAAAAGCGCTGGAGAAAGGTCCCCAAAAGGGTGGTGTTGCTGCGTACATTAACGAGCGTGCTTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTTTACCATTGTAGGTCAAGAGTTTACCAAAAATGGTTGGGGATTTGCCTTTCCACCAGACTCGCCATTAGCAGTTGACCTATCAACTGCCATTTTGGAGTTGGCAGAAAATGGAGATTTACAAAGGATCCATGACAAATGGCTTTTGAGTAGTGCGTGTCGATCACAAGGTGCGAAGCTTGGAGTGGACAGACTCAATCTCAAAAGCTTTTGGGGACTTTACTTGGTCTGTGGTTTGGCATGTTTTCTTGCTCTCTTGATATATCTTATTCAAACCTTGAGGCAGTACAAGAAGCACAGTCCAGATGAAGTTGAGTCTACTGGCCAAGGTTCTGGATCTTCACGTCTGCGGACTTTTCTTTCATTTGTAGATGAAAAAGAAGAGATAGTTAAGAACCGCTCCAAGAGAAGGCAAATGGAAAGGATATCATATAGAAGCACAAGTGAGGTTGGATCAACCATAGTCTCCAATAAAGATTTTTCTCAACCATCCTCAAACAGAATTGATTCTGAAGTATGA 2646 0.4218 MIRVWLVLLLMALPNLLISSAAVGLDNSTVPESLNIGVLYSFNTSVGRMVKIAVETAVNDINSDSSILGKTKLKLSLQEDSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELHVPLLSFTATDPTLSSLQFPFFIRTAFNDIFQMTAIADMVSHYGWREVIVVYGDDDHGRNGIGALADKLAERRCKISFKAPMTPDAKREEITDVLVQVALAESRVIVLHTSTSWGPKVLSVAKSLGMMQNGYVWIATTFLTSYIDIDSPLSSDEMDNIQGVITLRMYIPDSKLKRSFVSRWTNLTRGKEGNGPLGLSTYGIFAYDTVYVLARALDTFLKQGNQITFSHDPKISELRGDSLHLDAVKIFNEGNLLCKSIYAVNMTGVMGPFRYTPDGNLANPAYEIINVIGSGTRRIATHCVLAGRNNPNTSRLGFSKQWKAVKNWSTEKVNLLPYAVPYKFVPYGDGQNNPSNTELVRLITAGVFDAAVGDITITTERTKMVDFTQPYTESGLVVVASVKKTDSNAWAFLTPFTPMMWTVTAIFFLLVGAVVWILEHRLNDDFRGPPKKQVATILWFTFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLVNMKEPIGYLQGSFARSYLIDEIGIHESRLVPLKTPEETAKALEKGPQKGGVAAYINERAYIELFLSSRCDFTIVGQEFTKNGWGFAFPPDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACRSQGAKLGVDRLNLKSFWGLYLVCGLACFLALLIYLIQTLRQYKKHSPDEVESTGQGSGSSRLRTFLSFVDEKEEIVKNRSKRRQMERISYRSTSEVGSTIVSNKDFSQPSSNRIDSEV 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02204 881 Gene3D - 443 527 - -
Vifa4g02204 881 MobiDBLite consensus disorder prediction 853 881 - -
Vifa4g02204 881 Pfam Ligand-gated ion channel 758 790 IPR001320 GO:0015276|GO:0016020
Vifa4g02204 881 Pfam Bacterial extracellular solute-binding proteins, family 3 474 757 IPR001638 -
Vifa4g02204 881 Gene3D - 52 402 - -
Vifa4g02204 881 SUPERFAMILY Periplasmic binding protein-like II 455 759 - -
Vifa4g02204 881 SMART GluR_14 410 759 IPR001320 GO:0015276|GO:0016020
Vifa4g02204 881 Gene3D - 695 764 - -
Vifa4g02204 881 FunFam Glutamate receptor 528 658 - -
Vifa4g02204 881 CDD PBP1_GABAb_receptor_plant 35 418 IPR044440 -
Vifa4g02204 881 PIRSF IGluLR_plant 448 880 IPR017103 -
Vifa4g02204 881 PIRSF IGluLR_plant 1 423 IPR017103 -
Vifa4g02204 881 FunFam Glutamate receptor 150 304 - -
Vifa4g02204 881 Gene3D - 150 420 - -
Vifa4g02204 881 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 834 IPR015683 -
Vifa4g02204 881 PRINTS Metabotropic glutamate GPCR signature 103 129 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vifa4g02204 881 PRINTS Metabotropic glutamate GPCR signature 154 170 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vifa4g02204 881 PRINTS Metabotropic glutamate GPCR signature 135 154 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vifa4g02204 881 PRINTS Metabotropic glutamate GPCR signature 170 187 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vifa4g02204 881 FunFam Glutamate receptor 654 761 - -
Vifa4g02204 881 FunFam Glutamate receptor 446 528 - -
Vifa4g02204 881 SUPERFAMILY Periplasmic binding protein-like I 30 421 IPR028082 -
Vifa4g02204 881 Gene3D - 528 655 - -
Vifa4g02204 881 MobiDBLite consensus disorder prediction 840 881 - -
Vifa4g02204 881 Pfam Receptor family ligand binding region 51 412 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02204 Vifa-Chr4 670599117 670602497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02204 28 858 Ion Channels AT3G51480 55.869 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02204 K05387 - gmx:100788917 1304.66