LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g02194	ATGATATTAGGGAATCTCATTGCTATTACCCAAACAAGCATGAAACGTATGCTTGCCTATTCGTCCATAGGTCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGTTGTTCTATATCTCCATGAATATAGGAACTTTTGCTTGCATTGTGTTATTTGGTCTACGTACCGGAACTGATAACATTCGAGATTATGCAGGATTATACACGAAAGATCCTTTTTTGGCTCTCTCTTTAGCCCTATGTCTCTTATCCTTAGGAGGTCTTCCTCCACTAGCAGAACACCAATTGCTGAAATATGTTCGTATCGCTGGAAAAGCAAAAGGGTCAACCGGTCAAGTTTTACTTCAATTACTTGAAATGCGTTTGGATAACATACTTTTTCGATTGGGTATGGCTGTGACTATTCCTCAAGCCCGTCAATTAGTTAACCACAGACATGTTTTAGTTAATGGTCGTATAGTAAATATACCAAGTTATCGTTGTAAACCTGAAGATATTATTACAGCCAAGGATGAACAAAAATCTAGAACTCTGATTCAAAATTCTCTTCAATCAGCCCCCCGCGAAAAATTGCCAACCCATTTGACTCTTGATCCATCCCAATATAAAGGATTAGTCAATCAAATAATAGATAGTCAATGGGTTGGTTCGAAAATTAAGGAATTGCTGGTTGTAGAATATTATTCTCGTCAGACTAAAACCTAG	747	0.3681	MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYISMNIGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAEHQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAVTIPQARQLVNHRHVLVNGRIVNIPSYRCKPEDIITAKDEQKSRTLIQNSLQSAPREKLPTHLTLDPSQYKGLVNQIIDSQWVGSKIKELLVVEYYSRQTKT	248

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g02194	248	CDD	S4	134	193	-	-
	Vifa4g02194	248	Pfam	S4 domain	134	181	IPR002942	GO:0003723
	Vifa4g02194	248	Pfam	Proton-conducting membrane transporter	1	108	IPR001750	-
	Vifa4g02194	248	Gene3D	-	135	224	IPR036986	GO:0003723
	Vifa4g02194	248	FunFam	30S ribosomal protein S4, chloroplastic	133	229	-	-
	Vifa4g02194	248	Gene3D	Ribosomal Protein S4 Delta 41; Chain A, domain 1	105	244	-	-
	Vifa4g02194	248	ProSiteProfiles	S4 RNA-binding domain profile.	134	197	-	-
	Vifa4g02194	248	PANTHER	NADH DEHYDROGENASE	1	106	-	-
	Vifa4g02194	248	SUPERFAMILY	Alpha-L RNA-binding motif	105	244	-	-
	Vifa4g02194	248	ProSitePatterns	Ribosomal protein S4 signature.	132	156	IPR018079	GO:0019843

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g02194	Vifa-Chr4	669098300	669102001	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g02194	131	178	Cytoplasmic Ribosomal Protein Gene Family	AT5G39850	45.833	1.16e-06	46.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g02194	K02986		-	gmx:3989263	248.825

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