Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02194 ATGATATTAGGGAATCTCATTGCTATTACCCAAACAAGCATGAAACGTATGCTTGCCTATTCGTCCATAGGTCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGTTGTTCTATATCTCCATGAATATAGGAACTTTTGCTTGCATTGTGTTATTTGGTCTACGTACCGGAACTGATAACATTCGAGATTATGCAGGATTATACACGAAAGATCCTTTTTTGGCTCTCTCTTTAGCCCTATGTCTCTTATCCTTAGGAGGTCTTCCTCCACTAGCAGAACACCAATTGCTGAAATATGTTCGTATCGCTGGAAAAGCAAAAGGGTCAACCGGTCAAGTTTTACTTCAATTACTTGAAATGCGTTTGGATAACATACTTTTTCGATTGGGTATGGCTGTGACTATTCCTCAAGCCCGTCAATTAGTTAACCACAGACATGTTTTAGTTAATGGTCGTATAGTAAATATACCAAGTTATCGTTGTAAACCTGAAGATATTATTACAGCCAAGGATGAACAAAAATCTAGAACTCTGATTCAAAATTCTCTTCAATCAGCCCCCCGCGAAAAATTGCCAACCCATTTGACTCTTGATCCATCCCAATATAAAGGATTAGTCAATCAAATAATAGATAGTCAATGGGTTGGTTCGAAAATTAAGGAATTGCTGGTTGTAGAATATTATTCTCGTCAGACTAAAACCTAG 747 0.3681 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYISMNIGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAEHQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAVTIPQARQLVNHRHVLVNGRIVNIPSYRCKPEDIITAKDEQKSRTLIQNSLQSAPREKLPTHLTLDPSQYKGLVNQIIDSQWVGSKIKELLVVEYYSRQTKT 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02194 248 CDD S4 134 193 - -
Vifa4g02194 248 Pfam S4 domain 134 181 IPR002942 GO:0003723
Vifa4g02194 248 Pfam Proton-conducting membrane transporter 1 108 IPR001750 -
Vifa4g02194 248 Gene3D - 135 224 IPR036986 GO:0003723
Vifa4g02194 248 FunFam 30S ribosomal protein S4, chloroplastic 133 229 - -
Vifa4g02194 248 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 105 244 - -
Vifa4g02194 248 ProSiteProfiles S4 RNA-binding domain profile. 134 197 - -
Vifa4g02194 248 PANTHER NADH DEHYDROGENASE 1 106 - -
Vifa4g02194 248 SUPERFAMILY Alpha-L RNA-binding motif 105 244 - -
Vifa4g02194 248 ProSitePatterns Ribosomal protein S4 signature. 132 156 IPR018079 GO:0019843
Vifa4g02194 248 SMART s4_6 134 198 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02194 Vifa-Chr4 669098300 669102001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02194 131 178 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 45.833 1.16e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02194 K02986 - gmx:3989263 248.825