Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa4g02191 | ATGACTCGCTCATTTAGAACATTACAATCCATTTCCTCCGCCGCCCCTCCGCCGGACTCCACCGCTTCACTAGAATCCGACTTTGTCGTCATCCTCGCCGCACTCCTCTGCGCTCTCATATCCGTCGTCGGCCTCACCGCCATCGCCCGATGCGCCTGGCTCCGCCGCGGCCCCGCCGCCGGAGCCTCCCCGACCACCGCCGTCGCCAACAAAGGTCTCAAAAAGAAAGTTCTCAACTCACTTCCGAAATTCACCTACCTCGACGACACTCCCGGAAAATGGATAGTCTCATCTGAATGCGCCATTTGTCTCTCGGAGTTCACCGCCGGCGAAGAGGTTCGAGTACTTCCCCAGTGCGGTCACGGCTTCCACGTGGCGTGTGTAGACACGTGGCTTGGGTCTCACTCTTCGTGTCCTTCTTGCCGAGCTCCTTTCGCCGTCGCTAGGTGTCAGAAATGCGGACTCTACCAACCAACTCCCGCCGGGGAATCAACCGGAGAAACAGAGCCGAAAACCACCGGCGGCGAGAATGTAGAAGTGGTTGTGAATGCTAATTGTATAAGCGACGGTGTTGATAGACATAGCCACGGTGTTTATAACGGCTTCTTGCCGTAA | 615 | 0.5691 | MTRSFRTLQSISSAAPPPDSTASLESDFVVILAALLCALISVVGLTAIARCAWLRRGPAAGASPTTAVANKGLKKKVLNSLPKFTYLDDTPGKWIVSSECAICLSEFTAGEEVRVLPQCGHGFHVACVDTWLGSHSSCPSCRAPFAVARCQKCGLYQPTPAGESTGETEPKTTGGENVEVVVNANCISDGVDRHSHGVYNGFLP | 204 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa4g02191 | 204 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Vifa4g02191 | 204 | SUPERFAMILY | RING/U-box | 79 | 147 | - | - | |
| Vifa4g02191 | 204 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Vifa4g02191 | 204 | Pfam | Ring finger domain | 99 | 142 | IPR001841 | - | |
| Vifa4g02191 | 204 | SMART | ring_2 | 100 | 141 | IPR001841 | - | |
| Vifa4g02191 | 204 | CDD | RING-H2_EL5-like | 99 | 142 | - | - | |
| Vifa4g02191 | 204 | ProSiteProfiles | Zinc finger RING-type profile. | 100 | 142 | IPR001841 | - | |
| Vifa4g02191 | 204 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 14 | 154 | - | - | |
| Vifa4g02191 | 204 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 147 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa4g02191 | Vifa-Chr4 | 668282982 | 668283596 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa4g02191 | 5 | 153 | C3H Transcription Factor Family | AT1G20823 | 60.625 | 4.52e-60 | 185 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa4g02191 | - | - | gmx:100787383 | 250.366 |