Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02187 ATGTCTCGTGTTGAGATCATTGATCTTAAAAACTCTCATGATTCCTCTCTATCAACGCATATATCTTCATCTAATGTACCAACGATCTTTAACATTGGGCATGTTTCTACCAATCCTAATCGTCACAATCATATACACCATCATCAATACCAAACTAATATATGGGTCTCACCGCCACCAGGTTTCATGGTCTTACCACCGTCGAAATTCAACAATAACACCTCTGGGATTGCTACCATACCCCAACTTGGTATGCACGGTGGTAGCTCAATTGCAAGGGTTCTCCAACCCTTACTTGGATCAAATATCCTCCCATATTCAAATGGATTTAAGTCGAAGGTCCCTTGGTCTCAACAAGAGCATGACTTATTTGTGATGGGGTTGATTCAATATGGAAAAGGGAAATGGACCAAAATAGCAAAGCACTATGTATGCAATAAGACACCACAACAAGTTCAATCCCATGCACGTAGCTTCTTCAAGCATCTACCACCTACATATGTTCATTGTTTTAGGAGAAAGAAACTAAATTCAAATTCCAACAACCCTGTTACTACAAGAAATATGGAGACTCTCAATCTTTTTCCAAAGAAAGCTTATACAGGAGAATCTAGCTCTTCCATGACTGTAGCTAGTGTTTCTGCTTGTAATGGAGAAGTTGATGTGGAACTTCGTTTGAGTTTATATAAGTGA 693 0.3896 MSRVEIIDLKNSHDSSLSTHISSSNVPTIFNIGHVSTNPNRHNHIHHHQYQTNIWVSPPPGFMVLPPSKFNNNTSGIATIPQLGMHGGSSIARVLQPLLGSNILPYSNGFKSKVPWSQQEHDLFVMGLIQYGKGKWTKIAKHYVCNKTPQQVQSHARSFFKHLPPTYVHCFRRKKLNSNSNNPVTTRNMETLNLFPKKAYTGESSSSMTVASVSACNGEVDVELRLSLYK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02187 230 CDD SANT 115 160 IPR001005 -
Vifa4g02187 230 SMART sant 112 162 IPR001005 -
Vifa4g02187 230 SUPERFAMILY Homeodomain-like 111 163 IPR009057 -
Vifa4g02187 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 164 IPR017930 -
Vifa4g02187 230 Gene3D - 114 164 - -
Vifa4g02187 230 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 111 162 IPR043363 -
Vifa4g02187 230 Pfam Myb-like DNA-binding domain 113 158 IPR001005 -
Vifa4g02187 230 ProSiteProfiles Myb-like domain profile. 108 160 IPR001005 -
Vifa4g02187 230 NCBIfam myb-like DNA-binding domain, SHAQKYF class 111 162 IPR006447 GO:0003677
Vifa4g02187 230 ProSiteProfiles SANT domain profile. 111 164 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02187 Vifa-Chr4 667642710 667643728 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa4g02187 Myb_DNA-binding 1.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02187 - - psat:127074791 218.009