Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02174 ATGACAATAACTCCTCCTCCTTCTGATACTGAGGTTTCTGCACTTGAAAAAAAAAATCTGGGGCGTATCACGCAAATAATCGGTCCGGTACTCGATGTAGTTTTTCCACCAGGGAAGATGCCTTATATTTACAACGCTCTGATAGTTCAAGGTCGAGATACGGTTGGCCAACAAATTAACGTAACGTGTGAAGTACAGCAATTATTAGGAAATAATAGAATTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAAATAGAGGAATGGAAGTGATTGACACGGGAGTTGCTCTAAGTGTTCCAGTCGGTGGAGCAACCCTAGGTCGAATTTTCAACGTGCTTGGAGAGCCTATTGATAATTTGGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCTGCGCCTGCCTTTATACAGTTAGATACACAATTATCCATTTTTGAAACAGGAATTAAAGTAGTCGATCTTTTAGCTCCTTATCGCCGTGGCGGAAAAATAGGACTTTTCGGTGGAGCTGGGGTAGGTGAGCGTACTCGTGAGGGAAATGATCTTTATATGGAAATGAAAGAATCCGGAGTAATTAATGAAAAAAATATTGCGGAATCAAAAGTAGCTCTAGTCTACGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCAGAATATTTCCGAGATGTCAATGAGCAGGACGTCCTTCTATTTATCAACAATATCTTCCGTTTTGTCCAAGCCGGATCCGAAGTATCCGCCTTATTGGGCCGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTGGGTACTGAAATGGGTACTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCTATAACTTCTATTCAAGCAGTTTATGTACCTGCAGACGATTTGACTGATCCTGCTCCTGCCACGACATTTGCACATTTGGATGCAACTATTGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACCATGCTCCAACCTCGCATCGTCGGTGAAGAACATTATGAAACTGCGCAAAGAGTGAAACAAACGTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATTCTTGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAACGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACCGGTTCCCCAGGGAAATATGTTGGTCTAGCAGAAACAATTCGAGGATTTAAATTGATTCTTTCTGGAGAATTAGATAGTCTTCCTGAACAAGCCTTTTATTTGGTGGGTAATATCGATGAAGCTACTACGAAGGCTACGAACTTAACTTAG 1398 0.417 MTITPPPSDTEVSALEKKNLGRITQIIGPVLDVVFPPGKMPYIYNALIVQGRDTVGQQINVTCEVQQLLGNNRIRAVAMSATDGLNRGMEVIDTGVALSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTQLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGERTREGNDLYMEMKESGVINEKNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFINNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTEMGTLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATIVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDSLPEQAFYLVGNIDEATTKATNLT 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02174 465 Gene3D - 12 96 - -
Vifa4g02174 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 351 IPR027417 -
Vifa4g02174 465 Gene3D - 177 346 IPR027417 -
Vifa4g02174 465 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 349 463 - -
Vifa4g02174 465 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 174 346 IPR000194 GO:0005524
Vifa4g02174 465 CDD F1-ATPase_beta_CD 99 351 - -
Vifa4g02174 465 Gene3D - 349 465 IPR024034 -
Vifa4g02174 465 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 19 95 IPR036121 GO:0046034|GO:1902600
Vifa4g02174 465 FunFam ATP synthase subunit beta, chloroplastic 18 97 - -
Vifa4g02174 465 FunFam ATP synthase subunit beta 349 465 - -
Vifa4g02174 465 CDD ATP-synt_F1_beta_C 353 460 - -
Vifa4g02174 465 Gene3D - 97 176 IPR027417 -
Vifa4g02174 465 Pfam ATP synthase alpha/beta family, beta-barrel domain 23 95 IPR004100 GO:0046034|GO:1902600
Vifa4g02174 465 CDD ATP-synt_F1_beta_N 19 95 - -
Vifa4g02174 465 Hamap ATP synthase subunit beta [atpB]. 18 464 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vifa4g02174 465 ProSitePatterns ATP synthase alpha and beta subunits signature. 337 346 IPR020003 GO:0005524
Vifa4g02174 465 NCBIfam F0F1 ATP synthase subunit beta 174 464 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vifa4g02174 465 PANTHER ATP SYNTHASE 174 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02174 Vifa-Chr4 663704390 663705865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02174 86 407 Primary Pumps ATPases(2) AT4G38510 27.957 1.61e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02174 K02112 - gmx:3989272 841.262