LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g02170	ATGATATTAGGGAATCTCATTGCTATTACCCAAACAAGCATGAAACGTATGCTTGCCTATTCGTCCATAGGTCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGCTGTTCTATATCTCCATGAATATAGGAACTTTTGCTTGCATTGTGTTATTTGGTCTACGTACCGGAACTGATAACATTCGAGATTATGCAGGATTATACACGAAAGATCCTTTTTTGGCTCTCTCTTTAGCCCTATGTCTCTTATCCTTAGGAGGTCTTCCTCCACTAGCAGGAGTGTTTATGTCACGTTACAGAGGGCCTCGTTTGAAAAAAATACGCCGTCTGGGGGCTTTACCAGGACTAACCAGTAAACAGCTTCCAGTTGGAAGCGAACAATCGCGCTCCAGTGAAAAAAGGGAAAAAAGGGAAAAAAGGGAAAAATCTTACTATTCTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTCCAGAACGCCAATTGCTGAAATATGTTCGTATCGCTGGAAAAGCGAAAGGGTCAACCGGTCAAGTTTTACTTCAATTACTTGAAATGCGTTTGGATAACATACTTTTTCGATTGGGTATGGCTGTGACTATTCCTCAAGCCCGTCAATTAGTTAACCACAGACATGTTTTAGTTAATGGTCGTATAGTAAATATACCAAGTTATCGTTGTAAACCTGAAGATATTATTACAGCCAAGGATGAACAAAAATCTAGAACTCTGATTCAAAATTCTCTTCAATCAGCCCCCCGCGAAAAATTGCCAACCCATTTGACTCTTGATCCATCCCAATATAAAGGATTAGTCAATCAAATAATAGATAGTCAATGGGTTGGTTTGAAAATTAAGGAATTGCTGGTTGTAGAATATTATTCTCGTCAGACTAAAACCTAG	957	0.3783	MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYISMNIGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGVFMSRYRGPRLKKIRRLGALPGLTSKQLPVGSEQSRSSEKREKREKREKSYYSIRLEEKQKLRFHYGLPERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAVTIPQARQLVNHRHVLVNGRIVNIPSYRCKPEDIITAKDEQKSRTLIQNSLQSAPREKLPTHLTLDPSQYKGLVNQIIDSQWVGLKIKELLVVEYYSRQTKT	318

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g02170	318	Hamap	30S ribosomal protein S4 [rpsD].	110	314	IPR005709	GO:0003735\|GO:0006412\|GO:0015935
	Vifa4g02170	318	PANTHER	NADH DEHYDROGENASE	1	110	-	-
	Vifa4g02170	318	MobiDBLite	consensus disorder prediction	142	156	-	-
	Vifa4g02170	318	SUPERFAMILY	Alpha-L RNA-binding motif	112	314	-	-
	Vifa4g02170	318	CDD	S4	204	263	-	-
	Vifa4g02170	318	Pfam	Proton-conducting membrane transporter	1	110	IPR001750	-
	Vifa4g02170	318	Pfam	S4 domain	204	251	IPR002942	GO:0003723
	Vifa4g02170	318	SMART	s4_6	204	268	IPR002942	GO:0003723
	Vifa4g02170	318	Gene3D	-	203	299	IPR036986	GO:0003723
	Vifa4g02170	318	SMART	Ribosomal_S4_2	112	203	IPR001912	GO:0019843

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g02170	Vifa-Chr4	663683289	663686741	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g02170	200	248	Cytoplasmic Ribosomal Protein Gene Family	AT5G39850	44.898	1.38e-06	46.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g02170	K02986		-	cave:30215214	323.553

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