Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02154 ATGGACCTTTACACTGATCCAGAACCACCACCACCAGATTCCGCCACCGCTACCACCACTATCAACGGTGTAGCCTCATTGGATGAAAACCTAGAACCACCACCACCATCACCACCACCACCACCATCACAACCGCCACCACCACCACCACCACCAGAACTTCATTTCCCAATATCTTGGCCAGAAAACGGAACTCTAACCATAGAATGGATCCAAAACCTAACACTCTGCTTCGATTGGTCCTCCAAAAACCTCCTACCTTCCCAATTCCCTTCCGTTCTCCCCGTTCAAGTCTTCGATTCTCTCATTCTCATCGCTTCCAAGATGCTTCACAAGGAACCTAATTGCATCCCTATACAACCCTTTCGCCCCGAACCTGATTCTTCTGCGTCGGTTGTGGTTGTTGGAGACGTCCATGGTCAATTGCATGATGTGCTTTTCCTTTTCCGAGAAGCTGGGTACCCTTCTCGGGATCGAATCTTTGTATTCAATGGTGATTATGTTGATCGTGGAGCTTGGGGACTCGAAACTTTCTTACTCTTGTTGGCTTGGAAGGTATTCATGCCGGAGAATATATATTTATTAAGAGGGAATCACGAATCAAAATATTGCACATCTGTTTATGGTTTTGAGAAAGAAGTTATGGTAAAGTATAGTGACAGTGGTAAACATGTATACAGAAAATGTTTAGGATGCTTTGAAGGTCTTCCTTTGGCTTCTATTATAGCAGGGTGTGTATACACGGCTCACGGAGGACTTTTCCGTAGTGCAACTGTGACGCCTGCGAAGCGATTAAAAGGAAAGAAGAATCGTAGGATTAATGTTAATACCGACAGCAAAAAGCTATCGCTTGGTTCTTTGGAAGAGTTGTCAAGGGCTCGACGTTCTGTTCTTGACCCCCCTTGGGAAGGACAAAACTTGATTCCTGGTGATGTTTTGTGGTCTGACCCTTCACAAAGCAACGGCCTTTCTCCAAACAAAGAAAGAGGCATTGGTTTGATGTGGGGTCCCGATTGTACCGAACAATTTTTGAAGAAGTATCAATTGAAGTTAATCATCAGGTCTCATGAAGGTCCTGATGCTAGGGAGAAGAGGGATGGTTTTGAGGGAATGGCTGAAGGATACACTATTGATCATGTTGTAGATTCTGGAAAGCTGGTCACCGTTTTTAGTGCTCCAGATTACCCGCAGTTTCAGGCAACGGAGGAGAGGTACAACAACAAAGGTGCTTATGTTGTCCTTGAGCCCCCAAATTTCGACACTCCCATTTTTCATGGATTTTCAGCTGTAACTCCAAGACCAAAGGCGAATCCCTATTATGATTATGAAGAAGTGATCGACTCTGACGGAGAATTGGACTTGGCCTCCATGGTAACTTCATGA 1383 0.4497 MDLYTDPEPPPPDSATATTTINGVASLDENLEPPPPSPPPPPSQPPPPPPPPELHFPISWPENGTLTIEWIQNLTLCFDWSSKNLLPSQFPSVLPVQVFDSLILIASKMLHKEPNCIPIQPFRPEPDSSASVVVVGDVHGQLHDVLFLFREAGYPSRDRIFVFNGDYVDRGAWGLETFLLLLAWKVFMPENIYLLRGNHESKYCTSVYGFEKEVMVKYSDSGKHVYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSATVTPAKRLKGKKNRRINVNTDSKKLSLGSLEELSRARRSVLDPPWEGQNLIPGDVLWSDPSQSNGLSPNKERGIGLMWGPDCTEQFLKKYQLKLIIRSHEGPDAREKRDGFEGMAEGYTIDHVVDSGKLVTVFSAPDYPQFQATEERYNNKGAYVVLEPPNFDTPIFHGFSAVTPRPKANPYYDYEEVIDSDGELDLASMVTS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02154 460 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 59 455 - -
Vifa4g02154 460 CDD MPP_PP7 60 441 IPR041754 -
Vifa4g02154 460 Pfam Calcineurin-like phosphoesterase 131 359 IPR004843 GO:0016787
Vifa4g02154 460 Coils Coil 460 460 - -
Vifa4g02154 460 SUPERFAMILY Metallo-dependent phosphatases 89 435 IPR029052 -
Vifa4g02154 460 MobiDBLite consensus disorder prediction 31 56 - -
Vifa4g02154 460 FunFam Serine/threonine-protein phosphatase 78 455 - -
Vifa4g02154 460 SMART pp2a_7 94 434 IPR006186 GO:0016787
Vifa4g02154 460 PRINTS Serine/threonine phosphatase family signature 194 218 IPR006186 GO:0016787
Vifa4g02154 460 PRINTS Serine/threonine phosphatase family signature 291 318 IPR006186 GO:0016787
Vifa4g02154 460 PRINTS Serine/threonine phosphatase family signature 385 401 IPR006186 GO:0016787
Vifa4g02154 460 PRINTS Serine/threonine phosphatase family signature 231 257 IPR006186 GO:0016787
Vifa4g02154 460 PRINTS Serine/threonine phosphatase family signature 161 188 IPR006186 GO:0016787
Vifa4g02154 460 PRINTS Serine/threonine phosphatase family signature 131 158 IPR006186 GO:0016787
Vifa4g02154 460 ProSitePatterns Serine/threonine specific protein phosphatases signature. 195 200 IPR006186 GO:0016787
Vifa4g02154 460 Gene3D - 87 447 IPR029052 -
Vifa4g02154 460 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02154 Vifa-Chr4 662251957 662255314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02154 57 351 Calmodulin-binding Proteins AT5G63870 68.581 4.27e-151 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02154 K04460 - gmx:100802851 729.939