Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02147 ATGATCATTGATATGCCACCATCCATGGCTCAAAATTCCCGCTCAAGCAGATCTTCCTTTAGTTCTAACAATGGCACTGAGAATACTCTTGTCAACAACTACACTGCTGTTAGTATTGCCGATGATTCTGATTGTGATAGCTCAAATTTAGCACCATCAACTCCATCGACTCTGTCAATGGCTGTTCCAGCAGAACTTGCTGGAGCTATACCCTTGATTGACAAATTTCAGGTGGATGGATTTTTAAAAATGATGCATAAACAAATTCAATCTGCTGGGAAACGTGGTTTTTTTTCTAAAAGATCTTCAGATCCCCAAGCTCGTGAGAAATTTACATTTGAGGACATGCTTTCTTTTCAAAAGGATCCAATACCAACGGCATTGCTTAAGATTAATGGTGACTTAGTAAGTCGCGCGACAAAATTATTCCAGATGATTTTGAAGTATACCGGAGTTGTTGAGTCTTCTGATTGTGCAACTCCATTAAGCTTAGATGAACGAGTTGAGCTTGTTGAGAAACTATACAAGCATAGTTTGAAACGATCAGAACTTCGAGATGAGCTTTTTATTCAAATATCAAAACAAACAAGAAATAACCCTGATAGGCAATACTTGATCAAGTCATGGGAGCTTATGTATGTATGCGCATCCTCCATGTCCCCTAGTAAAGATATTGCAGTTTATTTGTCGGAATACGCTCATAACATAGCACATAGTGTTTCTACTGATTCCGAGATTCAAGCCCTTGCATTAAATTCGTTGAATGCTTTGAAGCGTTCTGTTAAGGCTGGTTCTAGACATGTAATACCTGGACGTGAAGAGATTGAAGCTTTGTTGACAGGGATAAAGCTTACAAATGTAGTGTTCTTCTTAGATGAAACATTTGAAGAAATTACGTACGACATGTCAACAACAGTCGCTGACGCTGTCGAGGAACTCGCAGGGCTCATTAAACTGTCTACATACTCTAGTTTTAGTCTGTTTGAATGTCGTAAAGTTATTACAAGTTCCAAATCATCTGATCCTGGGAATGAGGAGTACATTGGATTAGATGATAACAAATACATTGGGGATCTCCTGGCGGGCTTTAGAGCAGCCAAAGATCGAAATAAGGGAGATACTTTGCACTGTAAACTGATATTCAAGAAAAGGCTTTTTCGTGAATCTGATGAAGCTGTGACAGATCCAATGTTTGTGCAGTTGTCCTATGTACAATTGCAGCATGATTATATTTTGGGTAATTATCCTGTTGGAAAGGATGATGCTGCTCAGCTTTCTGCATTACAAATCCTGGCTGAGATTGGATCTGTTAGCACACCTGAATCATGCACTAACTGGAATTCACTTCTGGAGCGATTTCTTCCTAGACAAATTTCAATGACTCGAGCAAGACGTGAATGGGAGTTTGATATTCTTTCTCGATATCATTCATTGGAGCATCTGACAAAATATGACGCAAGACAACAATTTCTGCGTATATTGAGAGCCCTTCCTTATGGAAATTCTGTTTTCTTCAATGTTCGCAAGATTGATGATCCTATTGGACTCTTGCCTGGACGGATAATACTTGGAATCAATAAAAGAGGGATTCATTTTTTTCGTCCAGTTCCTAAGGAATATTTGCACTCAGCTGAGTTAAGAGACATAATGCAATTTGGTAGCAGCAATACGGCAGTCTTTTTCAAAATGCGAGTAGCCGGTGTTCTTCACATATTCCAATTTGACACCAAGCAGGGTGAAGAAATTTGCGTAGCTCTTCAGACACATATAAATGATGTAATGTTGCGCCGCTATTCGAAAACACGATCTTCTAGTGGCAGCAGTTCTTTGAATGGTGATGTTTCTAATAATTTAAAGCCTCCTAGTTCAGAAACATATGAGAAGCGAATTCAAGATTTATCTAAACTTGCTGAAGAATCTCAAAGAAATGTTGATCAATTGCATAAAGAATTGCGTGAGAAGGAGGAACAGGAAGAAGAATTGCAAGAACAGGTGCATGGTTTGAAGGAATCCTTAAAAGCTAATAAGCAAAATCTCGAGGCAGTTACAAGTGACCGGGAAAGGCTTAGGTTATTATGCAGTAAAAAAGATCTGGCGCTGCAGGTTATAGAGAACGATTCCAAAAAGGATCTTGTTGAAACAAATAACCAAGTGCTACAAAAGCTTAAGTATGAGCTAAAACATTATAAAGATGAGCTGCATTCAGCTGAGGAAATCATCGAAACCTTGACAAGCGAAAAAAAGATTTTAGAACAGAAACTGTCTGTGCTTGAGAAGAGGAATGCTGAAGAGAGTAATTCTCTTCAACGAAAACTTGAGCAAGAACGCAAAGCGGTGAAGTCTGAAGTGTATGACCTTGAAAGAAAGCTAGAAGGGTATAGACAAGAACTAATGGCGGCTAAGTCTATTATTTCAGTCAAGGACTCTGAGTTGACCACACTGAACAATAATCTCAAGGAACTTGAAGAATTGCGAGAAATGAAAGAGGATATTGATAGAAAGAATGAACAGACAGCTGCCATATTGAAGATGCAAGGAGCTCAACTAGCTGAGATGGAAACTCTTTACAAGGAAGAACAGGTTTTAAGAAAGCGTTATTTTAATGTTATAGAAGATATGAAAGGCAAGATCAGAGTTTATTGCAGGCTAAGACCTCTTAGTGACAAAGAGATTGCTGAAAAAGAAAGAGAAGCTGTTATTGCGGTAGATGAGTTTACTGTTGAGTTCCTTTGGAAAGACGATAAGCCAAAGCAGTACATATATGATCGTGTTTTTGGTGGTGATGCAACTCAAGAAACCGTATTTGAGGATACCAGGTATTTGGTGCAATCTGCCGTAGATGGTTTTAATGTGTGCATATTTGCTTATGGGCAAACTGGCTCCGGAAAGACATTTACAATCTATGGATCGGAAGACAACCCTGGACTTACACCTCGGGCAATTGCCGAACTTTTTAGAATTTTAAGGAGAGATGGTAACAAATATTCATTTTCGTTGAAGGCATACATGGTGGAATTATATCAAGATACACTTTTAGATCTTTTACTACCTAAGAATGCAAAGCATTCAAGATTGGATATCAAGAAGGATTCGACGGGAATGGTTGTTGTGGAAAACACAACAGTCGTGTCAATTTCTACAATTGAAGAACTGAATAATATAATACATAAGGGATCCGAACGACGGCATATATCAGGAACGCAAATGAATGCAGAAAGTTCGAGGTCTCATCTCATTCTTTCAATAGTAATTGAAAGTACAAACCTTCAAAGTCAGTCTGTTGCAAGGGGAAAGCTGAGTTTCGTTGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCGGGTTCTATGGGTAGTCAATTGAAGGAAGCACAGAGTATCAACAAATCGTTATCAGCGCTCGGAGATGTGATAAGTTCCTTGTCGTCTGGTGGTCAACACACACCTTATAGGAATCACAAGTTAACTATGTTGATGAGTGATTCACTTGGTGGTAATGCGAAAACTCTCATGTTTGTCAATGTTTCTCCAATAGAATCAAGCTTAGACGAGACTCATAACTCTCTCATGTATGCGTCGAGAGTTAGATCAATTGTAAATGATCCTAGCAAAAATGTGAGTTCAAAAGAAATAGCACGGTTAAAGAAGTTGGTTGCATATTGGAAACAACAAGCTGGTAGAGCAGAGAATGAAGATTTAGAAGAAATTCAAGAAGAAAGATTACCTAAAGAGAGACCAGATAGTCATGGTAGCTCTAGATATAGTCTAGGTTAA 3771 0.3858 MIIDMPPSMAQNSRSSRSSFSSNNGTENTLVNNYTAVSIADDSDCDSSNLAPSTPSTLSMAVPAELAGAIPLIDKFQVDGFLKMMHKQIQSAGKRGFFSKRSSDPQAREKFTFEDMLSFQKDPIPTALLKINGDLVSRATKLFQMILKYTGVVESSDCATPLSLDERVELVEKLYKHSLKRSELRDELFIQISKQTRNNPDRQYLIKSWELMYVCASSMSPSKDIAVYLSEYAHNIAHSVSTDSEIQALALNSLNALKRSVKAGSRHVIPGREEIEALLTGIKLTNVVFFLDETFEEITYDMSTTVADAVEELAGLIKLSTYSSFSLFECRKVITSSKSSDPGNEEYIGLDDNKYIGDLLAGFRAAKDRNKGDTLHCKLIFKKRLFRESDEAVTDPMFVQLSYVQLQHDYILGNYPVGKDDAAQLSALQILAEIGSVSTPESCTNWNSLLERFLPRQISMTRARREWEFDILSRYHSLEHLTKYDARQQFLRILRALPYGNSVFFNVRKIDDPIGLLPGRIILGINKRGIHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFDTKQGEEICVALQTHINDVMLRRYSKTRSSSGSSSLNGDVSNNLKPPSSETYEKRIQDLSKLAEESQRNVDQLHKELREKEEQEEELQEQVHGLKESLKANKQNLEAVTSDRERLRLLCSKKDLALQVIENDSKKDLVETNNQVLQKLKYELKHYKDELHSAEEIIETLTSEKKILEQKLSVLEKRNAEESNSLQRKLEQERKAVKSEVYDLERKLEGYRQELMAAKSIISVKDSELTTLNNNLKELEELREMKEDIDRKNEQTAAILKMQGAQLAEMETLYKEEQVLRKRYFNVIEDMKGKIRVYCRLRPLSDKEIAEKEREAVIAVDEFTVEFLWKDDKPKQYIYDRVFGGDATQETVFEDTRYLVQSAVDGFNVCIFAYGQTGSGKTFTIYGSEDNPGLTPRAIAELFRILRRDGNKYSFSLKAYMVELYQDTLLDLLLPKNAKHSRLDIKKDSTGMVVVENTTVVSISTIEELNNIIHKGSERRHISGTQMNAESSRSHLILSIVIESTNLQSQSVARGKLSFVDLAGSERVKKSGSMGSQLKEAQSINKSLSALGDVISSLSSGGQHTPYRNHKLTMLMSDSLGGNAKTLMFVNVSPIESSLDETHNSLMYASRVRSIVNDPSKNVSSKEIARLKKLVAYWKQQAGRAENEDLEEIQEERLPKERPDSHGSSRYSLG 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02147 1256 SMART MyTH4_1 119 279 IPR000857 GO:0005856
Vifa4g02147 1256 FunFam Kinesin-like calmodulin-binding protein 820 1199 - -
Vifa4g02147 1256 ProSiteProfiles FERM domain profile. 284 598 IPR000299 GO:0005856
Vifa4g02147 1256 Pfam Kinesin motor domain 882 1197 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa4g02147 1256 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 283 386 - -
Vifa4g02147 1256 Gene3D - 1200 1247 - -
Vifa4g02147 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 876 1227 IPR027417 -
Vifa4g02147 1256 SMART B41_5 280 504 IPR019749 -
Vifa4g02147 1256 SUPERFAMILY Prismane protein-like 819 880 IPR011254 GO:0003824|GO:0016491
Vifa4g02147 1256 CDD KISc_C_terminal 874 1199 - -
Vifa4g02147 1256 MobiDBLite consensus disorder prediction 1226 1249 - -
Vifa4g02147 1256 PRINTS Kinesin heavy chain signature 1098 1116 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa4g02147 1256 PRINTS Kinesin heavy chain signature 1067 1084 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa4g02147 1256 PRINTS Kinesin heavy chain signature 1147 1168 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa4g02147 1256 PRINTS Kinesin heavy chain signature 948 969 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa4g02147 1256 Gene3D - 502 610 IPR011993 -
Vifa4g02147 1256 Gene3D - 387 498 IPR014352 -
Vifa4g02147 1256 Gene3D MyTH4 domain 97 280 IPR038185 -
Vifa4g02147 1256 MobiDBLite consensus disorder prediction 1224 1256 - -
Vifa4g02147 1256 SUPERFAMILY Second domain of FERM 382 499 IPR035963 -
Vifa4g02147 1256 ProSitePatterns Kinesin motor domain signature. 1097 1108 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vifa4g02147 1256 Gene3D Kinesin motor domain 818 1198 IPR036961 -
Vifa4g02147 1256 MobiDBLite consensus disorder prediction 602 624 - -
Vifa4g02147 1256 ProSiteProfiles MyTH4 domain profile. 119 279 IPR000857 GO:0005856
Vifa4g02147 1256 ProSiteProfiles Kinesin motor domain profile. 876 1197 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa4g02147 1256 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 502 611 - -
Vifa4g02147 1256 SUPERFAMILY PH domain-like 504 592 - -
Vifa4g02147 1256 MobiDBLite consensus disorder prediction 8 26 - -
Vifa4g02147 1256 Pfam FERM central domain 390 504 IPR019748 -
Vifa4g02147 1256 CDD FERM_B-lobe 399 497 IPR019748 -
Vifa4g02147 1256 Coils Coil 1210 1230 - -
Vifa4g02147 1256 CDD FERM_C_KCBP 501 602 - -
Vifa4g02147 1256 Coils Coil 804 841 - -
Vifa4g02147 1256 PANTHER MYOSIN VII, XV 4 151 - -
Vifa4g02147 1256 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 98 281 - -
Vifa4g02147 1256 Coils Coil 712 796 - -
Vifa4g02147 1256 Coils Coil 623 678 - -
Vifa4g02147 1256 MobiDBLite consensus disorder prediction 1 26 - -
Vifa4g02147 1256 SMART kinesin_4 874 1205 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa4g02147 1256 FunFam Kinesin-like calmodulin binding protein 387 498 - -
Vifa4g02147 1256 Pfam MyTH4 domain 172 277 IPR000857 GO:0005856
Vifa4g02147 1256 Gene3D - 283 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02147 Vifa-Chr4 660501745 660509408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02147 53 1247 Calmodulin-binding Proteins AT5G65930 71.159 0.0 1749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02147 - - adu:107475586 1917.89