Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02130 ATGGGATCCAATAATAGCAAAGCCACTTCCTCTACAACTTCTTCTTCTTCTGCTTCAAGAAATTTCAGGAAGAGGAGTCGCTCTAAGGCTCTCAGAGGGTTTCATTCTTATTGCCTTGGAACTAGTTCTGGATCTCAAGACAGTGATGATGAAGACCAGGTCTGTGATAGTAATAAAGTAGATGGCAGTGTTGTTACATATGCTGATGGCAATCTATCAGACTCAGATGCGGTGAAGTCGAAATCTCTAAGAAAGGTTAAAGCTGGTGACAGTGAGAATACTTGTATGCCTAACATCAATCTTGGTGAGTGGAGTGAAACAAGGATCCGCGACACTTCATCTGGAAGTCGCACCAGCTCTGTGCACGCTTCTGCAACTTATTCGTTGAATCCAACAAGTCGATTCCTCTCTCGACTTAGGAGATTTACTAGTTCAAGGTCATCAAGGCCTTGTCCGGTTTCGTCTCCAAGTTTTTCAATATTTGACAATGAGGATGATGCATCAGGATCAGGTTTGCCTTGTTGCAACATGCAGAGAAATCCTAGTTGTGGCATTGGTGCAAGTGACGAGTTGGATGTGAACTTGTTTTCTTCGAGAATTCAAGCAGAGATGGATACTATTGAGACTAGGCATATAGATCGACGAAATAGAGTTCGAGAACCAGTTGAACATAATGTTCGTTTTAGTCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTTCGCCGATCAACATCATCTAACCTTACCTCATTCCCTCTACGACAAGAGAGAGAACTGAGAGATGATAGTCAGAATACTCGAAGGCAAACAGTGGAGCCAGATTCAAGAGTTTCACCATCAGATCAAAGTGCTGTTAGTTCTTCTACATCTAGTATGTCTAACTCCATGTTTAGCAATCAAAACTATGAAGTCGAGAGCTCACAATTGCAAGACGGTAGGTATCGGGATCTACTGGAGCATAGATTCAATTTCCTTGAACGAGGAAGAAGAATACAGTCACAGGCCCGTTCTCTTGAGCGATTAGGTAGCCGTTTTGAAAATCAATCTGCACATGGGAGATCATGTATCTTGTCTGGTCAACATAGAAGTGGTCGTTGTATGTGTCGATTTAGAAATCGTGACACGAATTCAAATGATGATTCTGGTGCTAGAGCTAGCATATCTAGAATTGTTGTTCTTGCAGAAGCTTTATTTGAGGTTCTCGATGAAATCCACCAGCAATCTGTGGTTTTATCTTCCCATTCTTCTGCGTCTTCTCTTGGATGTGTTCCCGCACCTATCAATATCGTGGAGTCTTTGCCTGTCAAGTTATACGAGAAGTTGCCTAAGCATCAAGAAGATGCTACACAATGCTATATATGCCTTGTGGAGTATGAGGACGGAGACAGCGTGCGAATTCTTCCTTGCCATCATGAATTTCATAGAACATGTATAGACAAGTGGTTGAAAGAGATTCACAGGGTATGCCCGCTATGTCGGGGGAACATCTGCATTTCTGATTCAGGACTTTAG 1518 0.4249 MGSNNSKATSSTTSSSSASRNFRKRSRSKALRGFHSYCLGTSSGSQDSDDEDQVCDSNKVDGSVVTYADGNLSDSDAVKSKSLRKVKAGDSENTCMPNINLGEWSETRIRDTSSGSRTSSVHASATYSLNPTSRFLSRLRRFTSSRSSRPCPVSSPSFSIFDNEDDASGSGLPCCNMQRNPSCGIGASDELDVNLFSSRIQAEMDTIETRHIDRRNRVREPVEHNVRFSRTLSVGRLRDRVLRRSTSSNLTSFPLRQERELRDDSQNTRRQTVEPDSRVSPSDQSAVSSSTSSMSNSMFSNQNYEVESSQLQDGRYRDLLEHRFNFLERGRRIQSQARSLERLGSRFENQSAHGRSCILSGQHRSGRCMCRFRNRDTNSNDDSGARASISRIVVLAEALFEVLDEIHQQSVVLSSHSSASSLGCVPAPINIVESLPVKLYEKLPKHQEDATQCYICLVEYEDGDSVRILPCHHEFHRTCIDKWLKEIHRVCPLCRGNICISDSGL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02130 505 ProSiteProfiles Zinc finger RING-type profile. 453 495 IPR001841 -
Vifa4g02130 505 MobiDBLite consensus disorder prediction 1 21 - -
Vifa4g02130 505 SMART ring_2 453 494 IPR001841 -
Vifa4g02130 505 MobiDBLite consensus disorder prediction 256 271 - -
Vifa4g02130 505 MobiDBLite consensus disorder prediction 272 298 - -
Vifa4g02130 505 MobiDBLite consensus disorder prediction 252 298 - -
Vifa4g02130 505 Pfam Ring finger domain 452 495 IPR001841 -
Vifa4g02130 505 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 170 - -
Vifa4g02130 505 MobiDBLite consensus disorder prediction 1 28 - -
Vifa4g02130 505 FunFam Putative RING zinc finger domain superfamily protein 423 500 - -
Vifa4g02130 505 SUPERFAMILY RING/U-box 431 500 - -
Vifa4g02130 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 499 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02130 Vifa-Chr4 653695064 653697428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02130 192 502 C3H Transcription Factor Family AT5G45290 56.918 1.59e-104 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02130 - - cam:101492704 598.971