Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02122 ATGGGCGATAATAGTGATGATCCACCTTTGTTTAGTAGCAGATTTGGGGTGGTACTGATTGCCATGGGCTCAGCTAGTTTTGTAGTAACAATGTACCATCTCATAGTCATTTGCTGCCAAAACTCATCTGAAGAAGCACGGCGGCACGAGCAACCGATGACACAAACGCCGAGCGGGGAAGAAGGAGGTTTTGTCGTGTCACATCAAATTCCTTCTCACAAATATGAGAAGAAAAATAATGATGATGAATGTGTGACTTGTGCTGTATGCTTGGGAGACTTTGAGGAGGGTGAAGAGTTGAGGACTATGCCTTCTTGTATACACTCTTTTCACGTGCCATGCATAGATATGTGGCTCCATTCGCATCCTAATTGTCCTGTTTGTCGCGCCGATGCCACGCCTTCCCCGGTGATGCCTAGCCGTTTACCGGAGCTTGGATCTGTCGAGGTGAACGTAGATCAAGGCATAGATATGGTTCAAATTATTGTTGTTCGATAA 498 0.4578 MGDNSDDPPLFSSRFGVVLIAMGSASFVVTMYHLIVICCQNSSEEARRHEQPMTQTPSGEEGGFVVSHQIPSHKYEKKNNDDECVTCAVCLGDFEEGEELRTMPSCIHSFHVPCIDMWLHSHPNCPVCRADATPSPVMPSRLPELGSVEVNVDQGIDMVQIIVVR 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02122 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 136 IPR013083 -
Vifa4g02122 165 SUPERFAMILY RING/U-box 69 135 - -
Vifa4g02122 165 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Vifa4g02122 165 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 132 IPR044675 -
Vifa4g02122 165 CDD RING-H2_EL5-like 87 129 - -
Vifa4g02122 165 SMART ring_2 87 128 IPR001841 -
Vifa4g02122 165 Pfam Ring finger domain 86 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02122 Vifa-Chr4 651576857 651577354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02122 17 133 C3H Transcription Factor Family AT5G17600 35.294 8.33e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02122 - - lja:Lj0g3v0111029.1 188.348