Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02121 ATGAATGAAGGAATAATGGCGTCGGATGAGAATGTGGCGGTTCGCGAGTTTTGCGCTAATGGAACATGCATGAACACAAATGAAGTTGAAGCTAAGCTTGATGAAGGAAATATTCAAGACGCTGAAACTGCATTGCGAGAAGGTTTATCTCTTAATTCCGAGGAAGCAAGAGCTCTACTCGGAAAATTTGAGTATCAAAGAGGTAATGTTGAGGGCGCTCTTCGTGTGTTTGATGGGATTGATCTTAGAGAAGCCATACAGCGTCTGCAAACTTCCATTTCGGAAAAGCCACCTGTCAAGAAAGGTCCCTCTCGTGCCGAATCACCTTCTTCCGCATCTCAGCATGCTGCTAGTATGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTACAAAAACTAGGGAAATTTGATGAAGCTGCTGATGAATGCAAAGAAGTTCTGGATGCTGTTGAGAAGATATTTGGTCAGGGTATACCTGATACTCAAGTGGACAATAGATTGCAGGAAATTGTAAGTTGTGCAGTAGAGCTTCTTCCGGAGCTTTGGAAGCAAGCCGGTTGCTATCACGACGCAATAACTGCTTACAGGCATGCTCTTCTCAGTCAATGGAACCTTGACAATGATTGCTGTGCGAGAATTCAGAAAGCATTTGCGGTTTTTTTGCTCTACGGTGGGGTGGAGGCAAGTCCGCCTAGTTTTTCCATTCAGATTGAAGGGTCTTATGTGCCTAAAAATAATCTGGAAGAGGCGATTCTTCTTATTATGATTCTTTTAAGGAAGTTTAGCCTAGGCAAGATAAAATGGGATCCTTCAATTATGGAACACCTAACTTTTGCACTTTCAGCGTGTGGCGAGACTTCTATTTTGGCGAAACAGTTTGAAGATTTGATTCCTGGTGTATATCATCGTATTGACCGTTGGAATTCTTTGGCTCTATGTTTTAGTGCGGACGGACAAAATAAAAGTGCTTTGAATCTGCTAAGAAAGTCTTTGCATAAACATGAGCGACCGAACGATGTTATAGCGTTATTATTGGCTGCAAGGATTTGCAGCGAGGATCCTCATCTTGCTGCTGAGGGAGCAGGGTATGCACAGAGGGTAATTAATAAAGCTCGGGGCTTAAACGAGCATTTGAAAGGCGTTGGTCTTAGAATGCTTGGACTTTGCCTTGGAAAGCAAGCTAAGGTTGCTTCCTCCGATTTCGAGAGGTCTATGCTTCAGTCAAAAGCATTGCAGTCATTAGAGGAGGCACTTAGATTAGAGCAAAACAATTTCGATCTAATCTTTGAATTGGCTATTCAATATGCCGTGCACCGAAACTTGTCTGTTGCTTTACGTTACGCCAAGCAGTTCTTCGACAAAACTGGTGGCTCGAAATTGAAAGGTTGGAGATTTCTTTCTCTGGTTTTGTCTGCACAGAAAAGATTTCCAGAGGCTGAAATGGTGACTGATGCTGCTATAGAGGAAACGTCAAAATGGGAGCAGGGGCCTCTTTTCAGGATAAAAGCCAAGCTGAAGATCGCCGAACTACGACCAATGGATGCTATTGAGATTTACCGGTACCTTCTCGCATTGGTTCAAGCCCAGAAGAAATCCACTGGAGCTCAAAAACTTAAGTCACGGGATGCGGATGATCAAATAAGCGAGTTTGATGTTTGGCATGGTCTAGCAAATTTATATGCAAGCCTTTCGCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCTAGAGAGTTGAAGCAATACTCTGCAGCAACAACACAAATTCAAGGTGTCGTGCTTGATGGTCGTGGACAATACAACGAAGCTCTTGCGGCTGCTGCTAATTCTGTCCTAATTGAACCAAACCATGTTCCAAGCAAGATCTTGATGGCTTCTTTGATGCTTAAAAATGGTTCCAAAGCATTACCTGTTTGTAGGAGCTTACTTTCTGATGCACTTAGAGTAGAACCAACTAACCGCAATGCTTGGTATTACCTCGGATTAACTCACAGGGATGATGGTCGAATAGGCGATGCTGCTGACTGCTTCCAGGCAGCTTCAATGCTTGAAGAATCTGATCCCATTGAAAGCTTTAGCTCTATGCTTTGA 2094 0.4327 MNEGIMASDENVAVREFCANGTCMNTNEVEAKLDEGNIQDAETALREGLSLNSEEARALLGKFEYQRGNVEGALRVFDGIDLREAIQRLQTSISEKPPVKKGPSRAESPSSASQHAASMVLEAIYLKAKSLQKLGKFDEAADECKEVLDAVEKIFGQGIPDTQVDNRLQEIVSCAVELLPELWKQAGCYHDAITAYRHALLSQWNLDNDCCARIQKAFAVFLLYGGVEASPPSFSIQIEGSYVPKNNLEEAILLIMILLRKFSLGKIKWDPSIMEHLTFALSACGETSILAKQFEDLIPGVYHRIDRWNSLALCFSADGQNKSALNLLRKSLHKHERPNDVIALLLAARICSEDPHLAAEGAGYAQRVINKARGLNEHLKGVGLRMLGLCLGKQAKVASSDFERSMLQSKALQSLEEALRLEQNNFDLIFELAIQYAVHRNLSVALRYAKQFFDKTGGSKLKGWRFLSLVLSAQKRFPEAEMVTDAAIEETSKWEQGPLFRIKAKLKIAELRPMDAIEIYRYLLALVQAQKKSTGAQKLKSRDADDQISEFDVWHGLANLYASLSHWKDAEICLQKARELKQYSAATTQIQGVVLDGRGQYNEALAAAANSVLIEPNHVPSKILMASLMLKNGSKALPVCRSLLSDALRVEPTNRNAWYYLGLTHRDDGRIGDAADCFQAASMLEESDPIESFSSML 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02121 697 MobiDBLite consensus disorder prediction 91 112 - -
Vifa4g02121 697 SUPERFAMILY TPR-like 515 685 IPR011990 GO:0005515
Vifa4g02121 697 SUPERFAMILY TPR-like 52 200 IPR011990 GO:0005515
Vifa4g02121 697 Gene3D Tetratricopeptide repeat domain 27 171 IPR011990 GO:0005515
Vifa4g02121 697 PANTHER PROTEIN NPG1 5 694 IPR043376 -
Vifa4g02121 697 SMART tpr_5 121 154 IPR019734 GO:0005515
Vifa4g02121 697 SMART tpr_5 655 688 IPR019734 GO:0005515
Vifa4g02121 697 SMART tpr_5 551 584 IPR019734 GO:0005515
Vifa4g02121 697 SMART tpr_5 305 338 IPR019734 GO:0005515
Vifa4g02121 697 SMART tpr_5 585 618 IPR019734 GO:0005515
Vifa4g02121 697 SUPERFAMILY TPR-like 121 446 IPR011990 GO:0005515
Vifa4g02121 697 Gene3D Tetratricopeptide repeat domain 629 693 IPR011990 GO:0005515
Vifa4g02121 697 Pfam Tetratricopeptide repeat 30 78 - -
Vifa4g02121 697 Gene3D Tetratricopeptide repeat domain 175 538 IPR011990 GO:0005515
Vifa4g02121 697 Gene3D Tetratricopeptide repeat domain 544 628 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02121 Vifa-Chr4 650827777 650830414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02121 10 697 Calmodulin-binding Proteins AT2G43040 68.353 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02121 K21843 - gmx:100811897 1118.61