Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02118 ATGGAGAACCCAAAATCCACAGATCAAGTTGTTCTCTTCCTTGACCAACAAGAAAACCCTAAACCTTCAGCAATGGACACTGAAACTCACCACAACACCACCGAACCTCATCATGAGAAACCCAAACACCCCTCAAGAGTCAAAACTCTTAGCCGTCTAAGCTTCTCCAAACCCAAATCTAGAATCTTTGAATACAATCATACACCTCGCAACAAACTACCTACCTTTGAAGAACAAGACACTCAACTACCTTCCTACAAAGTCTCTTCCGACGAAGAAGACGACTATGAATGGAAGGAACAAGAATCAGAAGAAGAAGAAGAAGAAGATCCAAAGTTAAACAAAAAGAAAAAGTTTAAGGTGAAGTGGAGGCTAGTTTTTGAATGGATACTATTTATAAACATCTTAACATGCTTGGTTTGTTCTCTAGTAATAAAAAAAATAAAAAACATGCATTTACTAGGGTTAGAAGTTTGGAGATGGTGTTTAATGGCAATGGTAACATTTAGTGGCCGTTTATTTTCAAGTTGGTTAGTTAGTTTTACCGTTCTCATCATAGAAAGAAACTTCATGCTAAGAGAAAAAGTTTTATACTTCATCTACGGTTTAAGAAACAGCATTCGTAATTGTCTATGGTTAGGTCTTGTTTTATTGTCCTATTGGAGTGTAGTTTTCGATGATGTCCAAAAGAAAAACCATAAATTCCTCAACAAAATGTTTCAAGCACTAGTTGCTGTTTTAATAGGTGCAACAATTTGGCTAGTGAAAATTGTTTTGGTGAAAATGCTAGCTTCATCTTTTCATGTGACAACATATTTTGATAGAATGAAAGAAAGTGTTTTTCATCATTATGTGTTGGACGCGTTGTCGGGTCCGCCGATGGAATACGGGGAGGAGATATCGAAAGAGCATCATTTGATGGGGTCGAAGACGATGCCGGTGGGGGCAGGGAGGTGGAAGAAGATGAAGAGATTTGGGTCAAGGAGGATTGATATGGAGAAGCTGAGGAAACTTAGTATGGAGAGTGGTGGTTCGGTTTGGAGTGTTAAGAGACTTGTTAATTATGTTAGGTCTTCTGGTTTGTCGACTATTTCTAGGACTGTTGATGATTTTGGGCATAAAGAGAGTGAGATTAGTAGTGAATGGGAAGCTAGAAGTTGTGCTCAGAAGATTTTTAACAATGTTGCTAAACCTGGTGCCAAGTATATTGAAGAGGTGGATCTCATGAGATATTTGAAGAGGGTTGAGATACATACCATATTCCCACTCTTTGAAGGTGCTCTTGAAACTGGAAAAATTAGCAGATCTTCATTTAGAAATTGGGTGATTCGAGCTTATTATGAAAGAAAAGCCCTAGCACAATCACTTAATGATACAAAAACAGCAGTGCAACAACTTCACAAATTAGCAAGTGCAGTTGTAAGTGTGATAATAATAATAGTGACCCTTTTGGTCATGGAAGTGGCTACAATCAAGATAATATTATTCTGTATCACACAAACAGTTTTAATAGGAGTTGCTTTTCAAGGCACTTGCAAAACTGTCTTGGAAGCTATTATCTTTGTCTTTATCATGCACCCTTTCGACATTGGAGACCGTTGCGTAATTGATGGTGTTCAGATGATTGTGGAAGAGATGAATATATTGACAACGGTGTTTCTTCGTTATGACAATGAGAAAATTTACTACCCTAATGCGGTCTTACTCACTAAGCCTATAAGCAATTTTTATCGAAGTCCCGAGATGCGTGATTCAATCGATTTCACCATTGATGTTACGACTCCTATAGAGACTATCATTGCACTAAAGAAATCAATACAAATGTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCATACTGTGATGGCAAAACAAATAGATCAAGTGGACAAATTAAAGTTGTGTTTAGGTGTGCAACACACCATTAACCATCAAAACTATGGTGAAAGAAGCATTAGGATATCAGAACTTCTCATGGAAATGAAAAAGATGTTTGAGATTCATGGCATTAAGTACCATCTTCTTCCTCAAGAAATTCATCTCACTAAAATGGATATTGGAGATGGGAGATCTTTGTTTCAATCATGA 2094 0.373 MENPKSTDQVVLFLDQQENPKPSAMDTETHHNTTEPHHEKPKHPSRVKTLSRLSFSKPKSRIFEYNHTPRNKLPTFEEQDTQLPSYKVSSDEEDDYEWKEQESEEEEEEDPKLNKKKKFKVKWRLVFEWILFINILTCLVCSLVIKKIKNMHLLGLEVWRWCLMAMVTFSGRLFSSWLVSFTVLIIERNFMLREKVLYFIYGLRNSIRNCLWLGLVLLSYWSVVFDDVQKKNHKFLNKMFQALVAVLIGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYVLDALSGPPMEYGEEISKEHHLMGSKTMPVGAGRWKKMKRFGSRRIDMEKLRKLSMESGGSVWSVKRLVNYVRSSGLSTISRTVDDFGHKESEISSEWEARSCAQKIFNNVAKPGAKYIEEVDLMRYLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAVVSVIIIIVTLLVMEVATIKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFIMHPFDIGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIYYPNAVLLTKPISNFYRSPEMRDSIDFTIDVTTPIETIIALKKSIQMYIESKPKYWNPKHTVMAKQIDQVDKLKLCLGVQHTINHQNYGERSIRISELLMEMKKMFEIHGIKYHLLPQEIHLTKMDIGDGRSLFQS 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02118 697 Coils Coil 89 109 - -
Vifa4g02118 697 MobiDBLite consensus disorder prediction 24 42 - -
Vifa4g02118 697 Gene3D - 527 576 IPR023408 -
Vifa4g02118 697 MobiDBLite consensus disorder prediction 1 111 - -
Vifa4g02118 697 FunFam Predicted mechanosensitive ion channel 527 576 - -
Vifa4g02118 697 PIRSF Memb_At2g17000 8 695 IPR016688 -
Vifa4g02118 697 SUPERFAMILY Sm-like ribonucleoproteins 518 576 IPR010920 -
Vifa4g02118 697 MobiDBLite consensus disorder prediction 1 23 - -
Vifa4g02118 697 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 17 686 IPR016688 -
Vifa4g02118 697 Pfam Mechanosensitive ion channel 468 673 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02118 Vifa-Chr4 649573388 649576954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02118 48 687 Mechanosensitive Ion Channel Family AT5G12080 43.199 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02118 K22048 - gmx:100813521 1056.59