Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02117 ATGGAGAGGTACAAATTAATTAAGGAAGTTGGGGATGGAACCTTTGGGAGTGTCTGGAGAGCTATTAATAAGCAAAGTGGTGAAGTTGTTGCAATCAAGAAAATGAAGAAAAAGTATTACTCTTGGGAGGAGTGTGTAAACCTAAGTGAAGTCAAGTCCTTACGAAAAATGAATCACTCAAATGTTGTGAAGCTGAAGGAAGTTATTCGAGAATGTGACATTCTGTACCTTGTTTTTGAGTACATGGAATGCAACCTCTACCAACTAATGAAAAAAAGGGAAAAACTGTTTTCTGAGGATGAGGTTAGAAACTGGTGTTTTCAAGTTTTCCAAGGTCTCGCGTACATGCACCAGCGTGGATATTTTCACCGTGATCTAAAGCCTGAAAATTTGCTTGTCACCAAGAATATTATCAAAGTTTCTGATTTCGGCCTAGTGCGAGAGATCAGCTCACAACCACCCTATACTGAGTATGTCTCCACACGGTGGTATCGTGCCCCTGAAGTCCTGCTTCAGTCTTTCCTTTATAGCTCCAAAGTTGACATGTGGGCAATGGGTGCTATTATGGCTGAGTTGTACACTCTCCGTCCTCTATTTCCGGGTACCAGTGAGGCAGACGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCACTGAATCTTGGGCCGATGGACTCAAACTTGCTAAGGATATCAACTATCAGTTTCCACAGCTAGCTGCCGCAGATCTTTCTGTACTGATTCCATCCAGAAGCGATGATGCAATCAACCTTATCAAATCACTTTGTTCATGGGATCCCTGCAAGAGGCCTGCTGCAGCAGAGGCCCTTCAACATCCTTTCTTCAAGAGCTGCTTTTACATCCCTCCATCGCTTCGCACCAGAGCAGTAACCAGAACTCCTCCATCTGCCGGAGTAAGGGGATCAGTGGATCGTCAAGGGGTCAGGAAATATTCTGGTGCATTGCCTAATTCAAAACTTGGCAATAATTTTTCTTCCATGAAATTACATCCTTCTGTAGCTCCAGGTGTGCAACGGAAGCTGGATATGGCAAAAGAGGACGGAATTAAAGATAAGAAATCAATGAAGACTACTACTCCACAATCGAAATATCAACCACCAGTAAAAGGCAGCCCGAGTTCTTTAAGCAAGGGGAGAACTGTGCGTTGTGTTTCAGAAACAACTGACAAGTTTGCCAACATGTCAATTTCTACTCGAAGACATTCCTTGAGTCAAACCCGTCAACCTCCAATGAAAGCTGGAGTTAATTGGAGTTCTGAATCTGGAAACATCCTGCTCAGGTCCTCCCAACAGATTCCAACTGGAAGAACTTTAACAAAAAAAGTTGCTGGATGA 1359 0.4319 MERYKLIKEVGDGTFGSVWRAINKQSGEVVAIKKMKKKYYSWEECVNLSEVKSLRKMNHSNVVKLKEVIRECDILYLVFEYMECNLYQLMKKREKLFSEDEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKNIIKVSDFGLVREISSQPPYTEYVSTRWYRAPEVLLQSFLYSSKVDMWAMGAIMAELYTLRPLFPGTSEADEIYKICSVIGSPTTESWADGLKLAKDINYQFPQLAAADLSVLIPSRSDDAINLIKSLCSWDPCKRPAAAEALQHPFFKSCFYIPPSLRTRAVTRTPPSAGVRGSVDRQGVRKYSGALPNSKLGNNFSSMKLHPSVAPGVQRKLDMAKEDGIKDKKSMKTTTPQSKYQPPVKGSPSSLSKGRTVRCVSETTDKFANMSISTRRHSLSQTRQPPMKAGVNWSSESGNILLRSSQQIPTGRTLTKKVAG 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02117 452 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 348 - -
Vifa4g02117 452 Gene3D Transferase(Phosphotransferase) domain 1 83 289 - -
Vifa4g02117 452 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
Vifa4g02117 452 FunFam serine/threonine-protein kinase MAK isoform X1 84 293 - -
Vifa4g02117 452 Pfam Protein kinase domain 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02117 452 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Vifa4g02117 452 ProSiteProfiles Protein kinase domain profile. 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02117 452 MobiDBLite consensus disorder prediction 366 389 - -
Vifa4g02117 452 SUPERFAMILY Protein kinase-like (PK-like) 1 287 IPR011009 -
Vifa4g02117 452 MobiDBLite consensus disorder prediction 355 389 - -
Vifa4g02117 452 CDD STKc_MAK_like 4 283 - -
Vifa4g02117 452 SMART serkin_6 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02117 452 FunFam serine/threonine-protein kinase MAK isoform X1 1 83 - -
Vifa4g02117 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02117 Vifa-Chr4 648956538 648960860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02117 1 290 Core Cell Cycle Gene Families AT3G48750 37.584 2.43e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Vifa4g02117 Pkinase 4.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02117 K08829 - gmx:100784474 783.867