Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02116 ATGTTTACATGCATAGCTTGTACGAAACAAACATCAGATGAGAGGGATGAAGATGGTCGAGAGAGTGGCACGCCTAGTACTAAAGAAGCTGTCAAAAGCATTACCACACAGATAAAAGATATGGCCTTAAAGTTTTCAGGTGCTTACAAGCAATGCAAACCATGCACAGGAGGATCAAGTAGCTACAACAAGAAAGGACACAGACCATATCCCGACTTCGACACAATCTCCGAAGGAGTTCCATACCCTTATATTGGAGGTGCAAGCTCAAGTTCAACCCCTGCATGGGATTTCACTACTTCCAACTATCCTGGTGCAAGATATGCCGGAGATCGTACCCCTAGAGGACGCGACTCTGCGTCAGTCTGTGATGTTGTGTTAGAGGATGAGGATGAACCTAAGGAATGGATGGCACAGGTTGAGCCAGGAGTTCATATTACCTTTGTTTCTCTTCCTAATGGTGGAAATGATCTCAAGAGAATTCGCTTCAGCCGAGAGATGTTCAATAAATGGCAAGCTCAAAAATGGTGGGGAGAAAATTACGACAGAATCATGGAGCTTTACAATGTCCAAAGATTTAATCGACAAGCTCTCAACACTCCTCCAAGGTCCGAGGCCGATGAGCAAAGAGATTCTACTTACTCAAGATTGACATCAGCAAGAGAAAGTCCTATGGCATCGGTTAAGGATTGGACGCCAAGGAGTCACTACAAACCGTCTGGACTAATGGATCAAGGCGGAGGCCACCACTTTCAAGCAGGGTCATCAATGGAACCATCAAGAGCAACTACTTCATCTAGAGACGAGCCTTCTATTAGCAATGCAAGTGAAATGGAGTCAGAATGGGTAGAACAAGATGAGCCTGGAGTCTACATTACAATCCGACAGTTAGCTGATGGTACTCGGGAGCTTAGACGTGTCCGATTCAGCCGAGAAAGATTCGGCGAGGTAAATGCAAAAACATGGTGGGAAGAGAACAGAGAAAGAATACAAGCTCAATACCTTTGA 1008 0.4504 MFTCIACTKQTSDERDEDGRESGTPSTKEAVKSITTQIKDMALKFSGAYKQCKPCTGGSSSYNKKGHRPYPDFDTISEGVPYPYIGGASSSSTPAWDFTTSNYPGARYAGDRTPRGRDSASVCDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQKWWGENYDRIMELYNVQRFNRQALNTPPRSEADEQRDSTYSRLTSARESPMASVKDWTPRSHYKPSGLMDQGGGHHFQAGSSMEPSRATTSSRDEPSISNASEMESEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02116 335 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 335 IPR044532 -
Vifa4g02116 335 Pfam Transcription factor regulating root and shoot growth via Pin3 134 188 IPR013591 -
Vifa4g02116 335 Pfam Transcription factor regulating root and shoot growth via Pin3 279 334 IPR013591 -
Vifa4g02116 335 ProSiteProfiles BRX domain profile. 134 189 IPR013591 -
Vifa4g02116 335 MobiDBLite consensus disorder prediction 10 30 - -
Vifa4g02116 335 Pfam Transcription factor BRX N-terminal domain 22 55 IPR027988 -
Vifa4g02116 335 MobiDBLite consensus disorder prediction 198 284 - -
Vifa4g02116 335 MobiDBLite consensus disorder prediction 256 279 - -
Vifa4g02116 335 ProSiteProfiles BRX domain profile. 280 335 IPR013591 -
Vifa4g02116 335 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02116 Vifa-Chr4 648915470 648919658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02116 1 335 Major Intrinsic Protein MIP AT1G31880 67.598 1.05e-165 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02116 - - ccaj:109789470 600.512