Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02096 ATGGATCCTGGTCGCTATGCACTGCATCAAGGCTGGGATAATAACAGCGCTCTGGAGGGTTATGGTGCGGTCCATGAGCCAAATTTTCGGGTTGGCGAATCTTATGACGAAAGAAGGTTTATTGATGAAAGATATCCCAGGGATGCTGTATACCAGAGAAATAATTTCCACCGTGATGTTTTGGACCGGGAGGCCTATTTGCCACCTGGACCCGCTGTTGGTCAATGGAGTCAATCCAAGCGAAGGGGTATTGATGAAGATTATCCCCTTGAAAGGGAATCTAGACGTTTTCAGAGACCTTACCACGAACCATACAATCAAATGGAGGGTTTCAGGGATCGTGAGATTGACATTTACCCGGAGTATGATAAGTTTCGAGACGGTTATACCAACATTGAACACTATGGTGATCGAGGATATGACAAACCTGCTAGGTTTGCAGGGCATGGCCGTGATGATTATGCGTATGATGATTATGGCCACAAGTCCCGCGTTTCGCATCATCGGAGGGAGGATAGCCATGAGAGGGATTATGATCATAGTCGGCATAGTTATGATTCTGATAATGAAAGAGATGGCAGAAAAGATAGTACTTGGAGGCGACGCGAATCACGTGATCGAGAACGAGACAAGAGATGTCTCAGTAGGGAAAAAGATTCAAGTCCCCAAAGGAAACATGAGCGTTCTCGATCGCGTTCACGATCTCATTCTCGGTCTCCTCGAGGTCGAAGCCATAGTCGGAGTTATCGGGAAGACAACTATGTTGATAACCGACATGAGAGAAGTGAAAGACGCAGCGACCGTGATGATAAACGTCAGCGGGAACATTATTCTGTGGCACCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACGACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGTCCCCTTCGTCATGTCCGTGTTATAAAGGAGCGACATTCTGGCATCTCCCGCGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAGCTAGGAGATGAAGGTCTTGTTGTGGACGGCAGGAAGCTTTTCTTCGAATATAGCAAGCCAACCGGAAGTGCAGGTCCAGACGGAGCTATGAAATCAGGTCATAGTCATAAGAGCATTACAATACCATCTGATTGGATGTGCACTATATGTAGCTACATCAATTTTGCACGCCGGACTTCTTGCTATCAGTGTAATGAACCACGCACTGATGATGCTCCTGCAGCAGACATTTCTTTATCAAATTCCTCATCTTTAGGAAAGAAAGGTTTGGAGGCAGGTCCAACTCATGTATTGGTTGTCCGTGGATTGGATGAAAATGCGGACGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATCAAGGATCTACGTCTTGTGAGAGATAAGTTTACTCATGTCTCGAGGGGATTTGCATTTGTACATTTTTATTCGGTAGAGGATGCTACCAAAGCTCTTGACTCAACAAATGGAACCACCCTTGAGAAGAATGGACAGATTCTAAGAGTAGCTTATGCGAAAAGCATACTAGGCCCTGGAACAGGAGCGTCAGGAACTTCACAATCAAGCAGTCTTGCAGCTGCAGCTATTGAGGCTGCAACATTTTCCCAACAGTATGATTCTGTTGGATGGGCTCCCAAAGAATACAATCCAGAGGACAAACAATCTAATGGTCCTGAGCAGACTGGAACTGATGCTGGGGCACCACAATCAGGCTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTACTTCTGGGTTTTATTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCGTATGACCACCATAATCAGCAGTATATCCCTTGCACTGACCAAAATCAGAATAAATCATCTAATAACGAGTCTGAACCTTCTAAGGCACCTGATGGTTCGAGCACTAAAAAAGTAGTGATTTCTGCACCAGCTACTACTGTTACTTCAAATGAGAAGCCAGCTTCACTGGCAGATGCTGTCCAGGCTGCTGCAGAAGCTGCTTTAGCTGCAGAGAAGAAAGATAAAGAAAAATCAAAGGAGATAAAACTTGCTTCAAAAAGTAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGCTGACAATGTGGAAGCAGAGGAGTCATGAGGGACAAGCTACTCGAGTGGCACTGGAGGACAATCAGTTATCTGGTTCTGTTGAGGATAGGTCATATTCTTCTGCATATTCTGCAAAGAATAAGTTAAAAACTGAGACAGCACCAAGGGAAATTAATGCGTCTAATCTGGGTGGTCACACAACTGCACAGGTTGCTGCTATTGACTCTCAATCACAGCCACGGCCCTTCAGTAATAGCCTTGGGGGCACTCTGATGGGGGTTATAAGGGGCTCAGGACGGGGGGTTGTTAAATCAGATACTTATTCTGGCTCTACGTCTGCCACACCATCTATGTCCACTTCTTCAGCAAATGTTGATGCCCAGACGTTTGCTACTCCTTTTAAAACAGATGTGTCTTCCCTGGGTTCATATACACCATCCACGTCTGTTGGAAGTGGACGAAGAAGGTTTTCAGAAATGCCACTCTCTGCTTCAACTCATAAGGAACAATCTCAAACAACAACCTACAGGGATCGGGCAGCTGAGAGAAGAAGTTTGTATGGCTCATCATCTTCAGTTGGCAATGATTTGTCTGACCTTGAAATTGGGGATTCAACTCGAGATTTTGCATCAAGGAGGGGTGACACAATGCCTTTCCCTCCTGGGGTTGGTGGAGGACGCACGGTTGGTGATGTCAACGTCGATACATTTGAGGTGATTACAGCAGACAAAGCGATAGATGAAAACAATGTTGGTAATCGGATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGACTAGGAAAAGATGGAAGTGGAATGATAGAGCCTGTTCAGACACAAGCCATGGAAAATAGAGCAGGACTAGGTAGTCAGCAGAAAAAGTTGGATCCTAGCCTCGAGGTTCAAGCTGGTGATAGCTATAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTCCGAGAAATGTAA 3105 0.4493 MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGESYDERRFIDERYPRDAVYQRNNFHRDVLDREAYLPPGPAVGQWSQSKRRGIDEDYPLERESRRFQRPYHEPYNQMEGFRDREIDIYPEYDKFRDGYTNIEHYGDRGYDKPARFAGHGRDDYAYDDYGHKSRVSHHRREDSHERDYDHSRHSYDSDNERDGRKDSTWRRRESRDRERDKRCLSREKDSSPQRKHERSRSRSRSHSRSPRGRSHSRSYREDNYVDNRHERSERRSDRDDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERHSGISRGFAFIDFPSVGAAQGMMDKLGDEGLVVDGRKLFFEYSKPTGSAGPDGAMKSGHSHKSITIPSDWMCTICSYINFARRTSCYQCNEPRTDDAPAADISLSNSSSLGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDSTNGTTLEKNGQILRVAYAKSILGPGTGASGTSQSSSLAAAAIEAATFSQQYDSVGWAPKEYNPEDKQSNGPEQTGTDAGAPQSGFVWDEASGYYYDATSGFYYDGNTGLYYDGNNGIWYSYDHHNQQYIPCTDQNQNKSSNNESEPSKAPDGSSTKKVVISAPATTVTSNEKPASLADAVQAAAEAALAAEKKDKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQLSGSVEDRSYSSAYSAKNKLKTETAPREINASNLGGHTTAQVAAIDSQSQPRPFSNSLGGTLMGVIRGSGRGVVKSDTYSGSTSATPSMSTSSANVDAQTFATPFKTDVSSLGSYTPSTSVGSGRRRFSEMPLSASTHKEQSQTTTYRDRAAERRSLYGSSSSVGNDLSDLEIGDSTRDFASRRGDTMPFPPGVGGGRTVGDVNVDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREM 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02096 1034 Pfam G-patch domain 960 1001 IPR000467 GO:0003676
Vifa4g02096 1034 SUPERFAMILY Ran binding protein zinc finger-like 380 414 IPR036443 -
Vifa4g02096 1034 CDD RRM1_RRM2_RBM5_like 437 517 - -
Vifa4g02096 1034 SUPERFAMILY RNA-binding domain, RBD 223 361 IPR035979 GO:0003676
Vifa4g02096 1034 MobiDBLite consensus disorder prediction 853 911 - -
Vifa4g02096 1034 Gene3D - 423 581 IPR012677 -
Vifa4g02096 1034 MobiDBLite consensus disorder prediction 628 650 - -
Vifa4g02096 1034 MobiDBLite consensus disorder prediction 244 277 - -
Vifa4g02096 1034 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 363 IPR000504 GO:0003723
Vifa4g02096 1034 SUPERFAMILY RNA-binding domain, RBD 437 521 IPR035979 GO:0003676
Vifa4g02096 1034 SMART G-patch_5 957 1003 IPR000467 GO:0003676
Vifa4g02096 1034 Gene3D - 214 368 IPR012677 -
Vifa4g02096 1034 MobiDBLite consensus disorder prediction 163 280 - -
Vifa4g02096 1034 MobiDBLite consensus disorder prediction 163 226 - -
Vifa4g02096 1034 CDD OCRE_SUA_like 577 630 IPR035623 -
Vifa4g02096 1034 Pfam OCRE domain 581 629 IPR041591 -
Vifa4g02096 1034 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 439 519 IPR000504 GO:0003723
Vifa4g02096 1034 MobiDBLite consensus disorder prediction 628 657 - -
Vifa4g02096 1034 ProSiteProfiles Zinc finger RanBP2 type profile. 384 413 IPR001876 -
Vifa4g02096 1034 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 344 IPR000504 GO:0003723
Vifa4g02096 1034 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 441 507 IPR000504 GO:0003723
Vifa4g02096 1034 MobiDBLite consensus disorder prediction 555 581 - -
Vifa4g02096 1034 SMART zf_4 386 410 IPR001876 -
Vifa4g02096 1034 PANTHER RNA-BINDING PROTEIN 180 1032 - -
Vifa4g02096 1034 MobiDBLite consensus disorder prediction 896 910 - -
Vifa4g02096 1034 SMART rrm1_1 440 515 IPR000504 GO:0003723
Vifa4g02096 1034 SMART rrm1_1 284 359 IPR000504 GO:0003723
Vifa4g02096 1034 ProSitePatterns Zinc finger RanBP2-type signature. 388 407 IPR001876 -
Vifa4g02096 1034 Gene3D - 382 414 - -
Vifa4g02096 1034 MobiDBLite consensus disorder prediction 227 243 - -
Vifa4g02096 1034 ProSiteProfiles G-patch domain profile. 959 1005 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02096 Vifa-Chr4 642952866 642959528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02096 282 503 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 5.51e-09 58.2