Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02094 ATGGATCCTGGTCGCTATGCACTGCATCAAGGCTGGGATAATAACAGCGCTCTGGAGGGTTATGGTGCGGTCCATGAGCCAAATTTTCGGGTTGGCGAATCTTATGACGAAAGAAGGTTTATTGATGAAAGATATCCCAGGGATGCTGTATACCAGAGAAATAATTTCCACCGTGATGTTTTGGACCGGGAGGCCTATTTGCCACCTGGACCCGCTGTTGGTCAATGGAGTCAATCCAAGCGAAGGGGTATTGATGAAGATTATCCCCTTGAAAGGGAATCTAGACGTTTTCAGAGACCTTACCACGAACCATACAATCAAATGGAGGGTTTCAGGGATCGTGAGATTGACATTTACCCGGAGTATGATAAGTTTCGAGACGGTTATACCAACATTGAACACTATGGTGATCGAGGATATGACAAACCTGCTAGGTTTGCAGGGCATGGCCGTGATGATTATGCGTATGATGATTATGGCCACAAGTCCCGCGTTTCGCATCATCGGAGGGAGGATAGCCATGAGAGGGATTATGATCATAGTCGGCATAGTTATGATTCTGATAATGAAAGAGATGGCAGAAAAGATAGTACTTGGAGGCGACGCGAATCACGTGATCGAGAACGAGACAAGAGATGTCTCAGTAGGGAAAAAGATTCAAGTCCCCAAAGGAAACATGAGCGTTCTCGATCGCGTTCACGATCTCATTCTCGGTCTCCTCGAGGTCGAAGCCATAGTCGGAGTTATCGGGAAGACAACTATGTTGATAACCGACATGAGAGAAGTGAAAGACGCAGCGACCGTGATGATAAACGTCAGCGGGAACATTATTCTGTGGCACCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACGACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGTCCCCTTCGTCATGTCCGTGTTATAAAGGAGCGACATTCTGGCATCTCCCGCGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAGCTAGGAGATGAAGGTCTTGTTGTGGACGGCAGGAAGCTTTTCTTCGAATATAGTAGCAAGCCAACCGGAAGTGCAGGTCCAGACGGAGCTATGAAATCAGGTCATAGTCATAAGAGCATTACAATACCATCTGATTGGATGTGCACTATATGTAGCTACATCAATTTTGCACGCCGGACTTCTTGCTATCAGTGTAATGAACCACGCACTGATGATGCTCCTGCAGCAGACATTTCTTTATCAAATTCCTCATCTTTAGGAAAGAAAGGTTTGGAGGCAGGTCCAACTCATGTATTGGTTGTCCGTGGATTGGATGAAAATGCGGACGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATCAAGGATCTACGTCTTGTGAGAGATAAGTTTACTCATGTCTCGAGGGGATTTGCATTTGTACATTTTTATTCGGTAGAGGATGCTACCAAAGCTCTTGACTCAACAAATGGAACCACCCTTGAGAAGAATGGACAGATTCTAAGAGTAGCTTATGCGAAAAGCATACTAGGCCCTGGAACAGGAGCGTCAGGAACTTCACAATCAAGCAGTCTTGCAGCTGCAGCTATTGAGGCTGCAACATTTTCCCAACAGTATGATTCTGTTGGATGGGCTCCCAAAGAATACAATCCAGAGGACAAACAATCTAATGGTCCTGAGCAGACTGGAACTGATGCTGGGGCACCACAATCAGGCTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTACTTCTGGGTTTTATTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCGTATGACCACCATAATCAGCAGTATATCCCTTGCACTGACCAAAATCAGAATAAATCATCTAATAACGAGTCTGAACCTTCTAAGGCACCTGATGGTTCGAGCACTAAAAAAGTAGTGATTTCTGCACCAGCTACTACTGTTACTTCAAATGAGAAGCCAGCTTCACTGGCAGATGCTGTCCAGGCTGCTGCAGAAGCTGCTTTAGCTGCAGAGAAGAAAGATAAAGAAAAATCAAAGGAGATAAAACTTGCTTCAAAAAGTAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGCTGACAATGTGGAAGCAGAGGAGTCATGAGGGACAAGCTACTCGAGTGGCACTGGAGGACAATCAGTTATCTGGTTCTGTTGAGGATAGGTCATATTCTTCTGCATATTCTGCAAAGAATAAGTTAAAAACTGAGACAGCACCAAGGGAAATTAATGCGTCTAATCTGGGTGGTCACACAACTGCACAGGTTGCTGCTATTGACTCTCAATCACAGCCACGGCCCTTCAGTAATAGCCTTGGGGGCACTCTGATGGGGGTTATAAGGGGCTCAGGACGGGGGGTTGTTAAATCAGATACTTATTCTGGCTCTACGTCTGCCACACCATCTATGTCCACTTCTTCAGCAAATGTTGATGCCCAGACGTTTGCTACTCCTTTTAAAACAGATGTGTCTTCCCTGGGTTCATATACACCATCCACGTCTGTTGGAAGTGGACGAAGAAGGTTTTCAGAAATGCCACTCTCTGCTTCAACTCATAAGGAACAATCTCAAACAACAACCTACAGGGATCGGGCAGCTGAGAGAAGAAGTTTGTATGGCTCATCATCTTCAGTTGGCAATGATTTGTCTGACCTTGAAATTGGGGATTCAACTCGAGATTTTGCATCAAGGAGGGGTGACACAATGCCTTTCCCTCCTGGGGTTGGTGGAGGACGCACGGTTGGTGATGTCAACGTCGATACATTTGAGGTGATTACAGCAGACAAAGCGATAGATGAAAACAATGTTGGTAATCGGATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGACTAGGAAAAGATGGAAGTGGAATGATAGAGCCTGTTCAGACACAAGCCATGGAAAATAGAGCAGGACTAGGTAGTCAGCAGAAAAAGTTGGATCCTAGCCTCGAGGTTCAAGCTGGTGATAGCTATAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTCCGAGAAATGTAA 3108 0.4492 MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGESYDERRFIDERYPRDAVYQRNNFHRDVLDREAYLPPGPAVGQWSQSKRRGIDEDYPLERESRRFQRPYHEPYNQMEGFRDREIDIYPEYDKFRDGYTNIEHYGDRGYDKPARFAGHGRDDYAYDDYGHKSRVSHHRREDSHERDYDHSRHSYDSDNERDGRKDSTWRRRESRDRERDKRCLSREKDSSPQRKHERSRSRSRSHSRSPRGRSHSRSYREDNYVDNRHERSERRSDRDDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERHSGISRGFAFIDFPSVGAAQGMMDKLGDEGLVVDGRKLFFEYSSKPTGSAGPDGAMKSGHSHKSITIPSDWMCTICSYINFARRTSCYQCNEPRTDDAPAADISLSNSSSLGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDSTNGTTLEKNGQILRVAYAKSILGPGTGASGTSQSSSLAAAAIEAATFSQQYDSVGWAPKEYNPEDKQSNGPEQTGTDAGAPQSGFVWDEASGYYYDATSGFYYDGNTGLYYDGNNGIWYSYDHHNQQYIPCTDQNQNKSSNNESEPSKAPDGSSTKKVVISAPATTVTSNEKPASLADAVQAAAEAALAAEKKDKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQLSGSVEDRSYSSAYSAKNKLKTETAPREINASNLGGHTTAQVAAIDSQSQPRPFSNSLGGTLMGVIRGSGRGVVKSDTYSGSTSATPSMSTSSANVDAQTFATPFKTDVSSLGSYTPSTSVGSGRRRFSEMPLSASTHKEQSQTTTYRDRAAERRSLYGSSSSVGNDLSDLEIGDSTRDFASRRGDTMPFPPGVGGGRTVGDVNVDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREM 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02094 1035 MobiDBLite consensus disorder prediction 629 658 - -
Vifa4g02094 1035 SUPERFAMILY RNA-binding domain, RBD 438 522 IPR035979 GO:0003676
Vifa4g02094 1035 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 442 508 IPR000504 GO:0003723
Vifa4g02094 1035 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 344 IPR000504 GO:0003723
Vifa4g02094 1035 Gene3D - 424 582 IPR012677 -
Vifa4g02094 1035 MobiDBLite consensus disorder prediction 556 582 - -
Vifa4g02094 1035 CDD OCRE_SUA_like 578 631 IPR035623 -
Vifa4g02094 1035 Pfam OCRE domain 582 630 IPR041591 -
Vifa4g02094 1035 MobiDBLite consensus disorder prediction 244 277 - -
Vifa4g02094 1035 SUPERFAMILY RNA-binding domain, RBD 223 361 IPR035979 GO:0003676
Vifa4g02094 1035 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 440 520 IPR000504 GO:0003723
Vifa4g02094 1035 SMART G-patch_5 958 1004 IPR000467 GO:0003676
Vifa4g02094 1035 SMART zf_4 387 411 IPR001876 -
Vifa4g02094 1035 MobiDBLite consensus disorder prediction 163 280 - -
Vifa4g02094 1035 MobiDBLite consensus disorder prediction 163 226 - -
Vifa4g02094 1035 Pfam G-patch domain 961 1002 IPR000467 GO:0003676
Vifa4g02094 1035 ProSiteProfiles Zinc finger RanBP2 type profile. 385 414 IPR001876 -
Vifa4g02094 1035 Gene3D - 214 367 IPR012677 -
Vifa4g02094 1035 MobiDBLite consensus disorder prediction 854 912 - -
Vifa4g02094 1035 Gene3D - 383 415 - -
Vifa4g02094 1035 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 363 IPR000504 GO:0003723
Vifa4g02094 1035 ProSitePatterns Zinc finger RanBP2-type signature. 389 408 IPR001876 -
Vifa4g02094 1035 MobiDBLite consensus disorder prediction 629 651 - -
Vifa4g02094 1035 PANTHER RNA-BINDING PROTEIN 194 1033 - -
Vifa4g02094 1035 SMART rrm1_1 441 516 IPR000504 GO:0003723
Vifa4g02094 1035 SMART rrm1_1 284 359 IPR000504 GO:0003723
Vifa4g02094 1035 MobiDBLite consensus disorder prediction 897 911 - -
Vifa4g02094 1035 CDD RRM1_RRM2_RBM5_like 438 518 - -
Vifa4g02094 1035 SUPERFAMILY Ran binding protein zinc finger-like 381 415 IPR036443 -
Vifa4g02094 1035 ProSiteProfiles G-patch domain profile. 960 1006 IPR000467 GO:0003676
Vifa4g02094 1035 MobiDBLite consensus disorder prediction 227 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02094 Vifa-Chr4 642952866 642959528 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02094 282 504 Eukaryotic Initiation Factors Gene Family AT2G36660 24.701 2.55e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02094 K13094 - gmx:100787998 1662.12