LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g02092	ATGGATGAGGTTAGACATGGAGGTAGTAGTAGTTGTAGTAGTGAAGCGGAGCAGACTCAGTCCAGAGCTACGTTTGTTGAAACGGCGTCGTCTTCCTCTTCATCAGGATGGTGTCCCAGGGAGCTTGCTTTTGCTCCTTTTGTGCCGCAGCAACAAAAAGAAGATAAACGAGTTAATGCTGCTGGGAAATCCTCAAAGTATCGTGCACTTGTTAGGAAGCCTTTGGTGGCAAGATTGACCAAGGAAATAGTTGAAACATATCAAATATGCAATCCACAGTTTAAATATTCCGAAGATCTAAATCCAAAGAGATTTTTGACCAGTCCATCTACTGGAGTGCTTAATGATGGCTATGATAATCTAAACTCAGATCTTATTCTGACAGTGAATTTGGTCTTGATCCATGTAGAGAAAAGTAGAAGATATACTGTCAAAGATCTCCTTGGCCACGGGACATTTGGACAAGTGGCCAAATGCTGGGATTCCGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAACCTGCGTATTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTACGATCCTGAGGATAAGCATCACATTGTTCGTATATTTGATTATTTTGTATATCAACGGCATTTGTGCATATGCTTTGAATTGCTGGACACAAACCTGTATGAGCTTATCAAAATGAATCATTTTAGGGGATTGTCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATCCTTTTATGTGCGAGCAGTGCGAATCAAACAGAAATAAAGATTATTGACTTCGGATCAGCATGCATGGAAAACCGCACTGTGTATTCCTATATTCAGAGTCGATACTATAGGTCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGGTGCATAGTGGCGGAATTATTTCTTGGATTACCATTATTCCCCGGGGCTTCAGAATTTGATCTTTTGAAAAGGATGATTGAAATAATTGGAGGACAACCACCTGATTATGTACTACGTGACGCTAAAAACACTAGTAAATTCTTTAAGTGTATCGGGAGTCTCCAAAACATAGAAATCAGCGAGGGTTCCAAAAATGGAAGTGTTTATCAAGCATTGACAGAGGAAGAATATGAAGCTAGAGATTTGAAGAAGCCATCAATTGGAAAAGAGTATTTTAAACATATGGATCTGGAAGCAATTGTTTCAAACTACCCCTACAGGAAAAACCTACCTAAGGAAGATATTGCCAAAGAAAGTCAAATTCGATTGGCTCTTATTGACTTTTTGAGAGGGCTTGTTGAATTTGACCCTGCAAAACGTTGGTCTCCCTTCCAGGCTTCCAAACACCCTTTTGTAACTGGGGAACCTTTTACTCACCCTTACAGACCGTCCCCCGAGACCCCTCATATTCCGGTAGTTCAAAATATCAAGGTTGATAATCATAAAGGTGGAGGGCACTGGTTTGCTGCTGGCCTATCACCAAATGTTGCAGGAAAAAACAGAGCTTCCCTCTATAGTAGTCCACATTTTCAGATGGCGCAACATCCACCTGCAAATAGTTATGGAAGTCTTGGAAGCCATGGGAGCTATAATGATAATGTTGGGCTTGGAAGCAGCTATGGAAGTTATGGAGAGAGCAGTAACATGTTTGCTTATTATTCACCTATTGGTCCATCTGGTATGAATATGCACAGTCAGGGTGGTATGGCAATGCTTGGAAATAGTCCTGATGCTCGAAGAAGAGTTAAGTACCAACCAGGGAATGGACTGGGTGTAAGTCCATCTGGTGGAAATTTTGCTCCCTTGCCTCTTGGTGCCAGTCCATCTCAATTTACTCCACCAAGTTCATATAGTCAGATTTCAGTTGGTTCACCAGGACATTATGGACCTACATCTCCTGCAAGAGGAACCTCTCATGGATCCCCTTTAGGCAAGTCGGCTGCCGTTAGCCAGTTTAATAGAAGGAAAAACTGGGGACATTCTGGAAGTCCACAAACTCAAGAAACAACTTTTTCTTCACATTGGCATGGTCAATATCCCGATAGCTTATGTCAGGCTGAGGGAACATCACAGGCTCCTGGCAGTTCACCATCATATTTAAAATCAAATATTAATCCTGGAAACTGGAAGCAGCGTGGAAGCGTATCTGCTAATCAGAACATTCCATCCATGAATAATCCTGGTTCTAATATGAATTCACAATCGACTGATTTGATTCATGACAGTGTGGAGACAGGTTTTTCACTGCCCGACCCTGGAGATTGGGATCCTAATTACAGTGATGAACTACTTCTGCAAGAAGGTGGTTCAGATGAAAGCTGTTTGACAACTGAGTTTGGCAGAAGTATGAATCTTGGTTCCAGTGAACCATGGTCTGGATTCGGAAGGTTGGACCATGTCTCCAACTCAAGTTCTTCAATAACCATGCAGAGAATAAATGGACCTAGTCAAACATTTTCTAATGTTGAGATGGGTAGCCCCCCAACACATGATCCTCAAGCAGCATATATACCCTCTATCTCAAAGCCTTTTCATCTCATGCCGCATGTTTTACAAAATTCTCCAAGCCGTTTTGGACACCAATCTGTTCAAAGATTTACACATGGTAGACCTCCTCAGGGTAGTGACTGGAATCAAATTAAGATTCAGGCTCCTTCTGGTTTCAGCAATGTGGGCCCGCGTTCTCCCAGGAATGCCTCATTCACCGGCAGTATGACATGGGGGCGAAGAATGAATCCTCCTATCTCAAGCATTCCTCCTATCTCAAACATACCACCCACATCTCGTTCAAGAAAAGACTATGCAAGGATAGACTAG	2913	0.4181	MDEVRHGGSSSCSSEAEQTQSRATFVETASSSSSSGWCPRELAFAPFVPQQQKEDKRVNAAGKSSKYRALVRKPLVARLTKEIVETYQICNPQFKYSEDLNPKRFLTSPSTGVLNDGYDNLNSDLILTVNLVLIHVEKSRRYTVKDLLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIFDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKDAGIIHCDLKPENILLCASSANQTEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEIIGGQPPDYVLRDAKNTSKFFKCIGSLQNIEISEGSKNGSVYQALTEEEYEARDLKKPSIGKEYFKHMDLEAIVSNYPYRKNLPKEDIAKESQIRLALIDFLRGLVEFDPAKRWSPFQASKHPFVTGEPFTHPYRPSPETPHIPVVQNIKVDNHKGGGHWFAAGLSPNVAGKNRASLYSSPHFQMAQHPPANSYGSLGSHGSYNDNVGLGSSYGSYGESSNMFAYYSPIGPSGMNMHSQGGMAMLGNSPDARRRVKYQPGNGLGVSPSGGNFAPLPLGASPSQFTPPSSYSQISVGSPGHYGPTSPARGTSHGSPLGKSAAVSQFNRRKNWGHSGSPQTQETTFSSHWHGQYPDSLCQAEGTSQAPGSSPSYLKSNINPGNWKQRGSVSANQNIPSMNNPGSNMNSQSTDLIHDSVETGFSLPDPGDWDPNYSDELLLQEGGSDESCLTTEFGRSMNLGSSEPWSGFGRLDHVSNSSSSITMQRINGPSQTFSNVEMGSPPTHDPQAAYIPSISKPFHLMPHVLQNSPSRFGHQSVQRFTHGRPPQGSDWNQIKIQAPSGFSNVGPRSPRNASFTGSMTWGRRMNPPISSIPPISNIPPTSRSRKDYARID	970

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g02092	970	MobiDBLite	consensus disorder prediction	641	658	-	-
	Vifa4g02092	970	SUPERFAMILY	Protein kinase-like (PK-like)	136	506	IPR011009	-
	Vifa4g02092	970	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	17	487	-	-
	Vifa4g02092	970	FunFam	Dual specificity tyrosine-phosphorylation-regulated kinase 1A	105	221	-	-
	Vifa4g02092	970	Gene3D	Transferase(Phosphotransferase) domain 1	223	485	-	-
	Vifa4g02092	970	MobiDBLite	consensus disorder prediction	917	943	-	-
	Vifa4g02092	970	MobiDBLite	consensus disorder prediction	1	36	-	-
	Vifa4g02092	970	MobiDBLite	consensus disorder prediction	633	747	-	-
	Vifa4g02092	970	Pfam	Protein kinase domain	142	484	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa4g02092	970	CDD	PKc_YAK1	142	484	-	-
	Vifa4g02092	970	Gene3D	Phosphorylase Kinase; domain 1	106	222	-	-
	Vifa4g02092	970	MobiDBLite	consensus disorder prediction	917	970	-	-
	Vifa4g02092	970	ProSiteProfiles	Protein kinase domain profile.	142	484	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa4g02092	970	ProSitePatterns	Protein kinases ATP-binding region signature.	148	171	IPR017441	GO:0005524
	Vifa4g02092	970	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	265	277	IPR008271	GO:0004672\|GO:0006468
	Vifa4g02092	970	MobiDBLite	consensus disorder prediction	666	747	-	-
	Vifa4g02092	970	MobiDBLite	consensus disorder prediction	7	36	-	-
	Vifa4g02092	970	SMART	serkin_6	142	484	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g02092	Vifa-Chr4	642868718	642881135	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g02092	138	371	MAP Kinase Gene Family	AT1G18150	34.538	4.17e-32	131

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-YAK	Vifa4g02092		Pkinase	3.6e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g02092	K18670		-	gmx:100792777	1631.31