LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g02090	ATGGATGAGGTTAGACATGGAGGTAGTAGTAGTTGTAGTAGTGAAGCGGAGCAGACTCAGTCCAGAGCTACGTTTGTTGAAACGGCGTCGTCTTCCTCTTCATCAGGATGGTGTCCCAGGGAGCTTGCTTTTGCTCCTTTTGTGCCGCAGCAACAAAAAGAAGATAAACGAGTTAATGCTGCTGGGAAATCCTCAAAGTATCGTGCACTTGTTAGGAAGCCTTTGGTGGCAAGATTGACCAAGGAAATAGTTGAAACATATCAAATATGCAATCCACAGTTTAAATATTCCGAAGATCTAAATCCAAAGAGATTTTTGACCAGTCCATCTACTGGAGTGCTTAATGATGGCTATGATAATCTAAACTCAGATCTTATTCTGACAGTGAATTTGGTCTTGATCCATGTAGAGAAAAGTAGAAGATATACTGTCAAAGATCTCCTTGGCCACGGGACATTTGGACAAGTGGCCAAATGCTGGGATTCCGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAACCTGCGTATTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTACGATCCTGAGGATAAGCATCACATTGTTCGTATATTTGATTATTTTGTATATCAACGGCATTTGTGCATATGCTTTGAATTGCTGGACACAAACCTGTATGAGCTTATCAAAATGAATCATTTTAGGGGATTGTCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATCCTTTTATGTGCGAGTGCGAATCAAACAGAAATAAAGATTATTGACTTCGGATCAGCATGCATGGAAAACCGCACTGTGTATTCCTATATTCAGAGTCGATACTATAGGTCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGGTGCATAGTGGCGGAATTATTTCTTGGATTACCATTATTCCCCGGGGCTTCAGAATTTGATCTTTTGAAAAGGATGATTGAAATAATTGGAGGACAACCACCTGATTATGTACTACGTGACGCTAAAAACACTAGTAAATTCTTTAAGTGTATCGGGAGTCTCCAAAACATAGAAATCAGCGAGGGTTCCAAAAATGGAAGTGTTTATCAAGCATTGACAGAGGAAGAATATGAAGCTAGAGATTTGAAGAAGCCATCAATTGGAAAAGAGTATTTTAAACATATGGATCTGGAAGCAATTGTTTCAAACTACCCCTACAGGAAAAACCTACCTAAGGAAGATATTGCCAAAGAAAGTCAAATTCGATTGGCTCTTATTGACTTTTTGAGAGGGCTTGTTGAATTTGACCCTGCAAAACGTTGGTCTCCCTTCCAGGCTTCCAAACACCCTTTTGTAACTGGGGAACCTTTTACTCACCCTTACAGACCGTCCCCCGAGACCCCTCATATTCCGGTAGTTCAAAATATCAAGGTTGATAATCATAAAGGTGGAGGGCACTGGTTTGCTGCTGGCCTATCACCAAATGTTGCAGGAAAAAACAGAGCTTCCCTCTATAGTAGTCCACATTTTCAGATGGCGCAACATCCACCTGCAAATAGTTATGGAAGTCTTGGAAGCCATGGGAGCTATAATGATAATGTTGGGCTTGGAAGCAGCTATGGAAGTTATGGAGAGAGCAGTAACATGTTTGCTTATTATTCACCTATTGGTCCATCTGGTATGAATATGCACAGTCAGGGTGGTATGGCAATGCTTGGAAATAGTCCTGATGCTCGAAGAAGAGTTAAGTACCAACCAGGGAATGGACTGGGTGTAAGTCCATCTGGTGGAAATTTTGCTCCCTTGCCTCTTGGTGCCAGTCCATCTCAATTTACTCCACCAAGTTCATATAGTCAGATTTCAGTTGGTTCACCAGGACATTATGGACCTACATCTCCTGCAAGAGGAACCTCTCATGGATCCCCTTTAGGCAAGTCGGCTGCCGTTAGCCAGTTTAATAGAAGGAAAAACTGGGGACATTCTGGAAGTCCACAAACTCAAGAAACAACTTTTTCTTCACATTGGCATGGTCAATATCCCGATAGCTTATGTCAGGCTGAGGGAACATCACAGGCTCCTGGCAGTTCACCATCATATTTAAAATCAAATATTAATCCTGGAAACTGGAAGCAGCGTGGAAGCGTATCTGCTAATCAGAACATTCCATCCATGAATAATCCTGGTTCTAATATGAATTCACAATCGACTGATTTGATTCATGACAGTGTGGAGACAGGTTTTTCACTGCCCGACCCTGGAGATTGGGATCCTAATTACAGTGATGAACTACTTCTGCAAGAAGGTGGTTCAGATGAAAGCTGTTTGACAACTGAGTTTGGCAGAAGTATGAATCTTGGTTCCAGTGAACCATGGTCTGGATTCGGAAGGTTGGACCATGTCTCCAACTCAAGTTCTTCAATAACCATGCAGAGAATAAATGGACCTAGTCAAACATTTTCTAATGTTGAGATGGGTAGCCCCCCAACACATGATCCTCAAGCAGCATATATACCCTCTATCTCAAAGCCTTTTCATCTCATGCCGCATGTTTTACAAAATTCTCCAAGCCGTTTTGGACACCAATCTGTTCAAAGATTTACACATGGTAGACCTCCTCAGGGTAGTGACTGGAATCAAATTAAGATTCAGGCTCCTTCTGGTTTCAGCAATGTGGGCCCGCGTTCTCCCAGGAATGCCTCATTCACCGGCAGTATGACATGGGGGCGAAGAATGAATCCTCCTATCTCAAGCATTCCTCCTATCTCAAACATACCACCCACATCTCGTTCAAGAAAAGACTATGCAAGGATAGACTAG	2910	0.4179	MDEVRHGGSSSCSSEAEQTQSRATFVETASSSSSSGWCPRELAFAPFVPQQQKEDKRVNAAGKSSKYRALVRKPLVARLTKEIVETYQICNPQFKYSEDLNPKRFLTSPSTGVLNDGYDNLNSDLILTVNLVLIHVEKSRRYTVKDLLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIFDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKDAGIIHCDLKPENILLCASANQTEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEIIGGQPPDYVLRDAKNTSKFFKCIGSLQNIEISEGSKNGSVYQALTEEEYEARDLKKPSIGKEYFKHMDLEAIVSNYPYRKNLPKEDIAKESQIRLALIDFLRGLVEFDPAKRWSPFQASKHPFVTGEPFTHPYRPSPETPHIPVVQNIKVDNHKGGGHWFAAGLSPNVAGKNRASLYSSPHFQMAQHPPANSYGSLGSHGSYNDNVGLGSSYGSYGESSNMFAYYSPIGPSGMNMHSQGGMAMLGNSPDARRRVKYQPGNGLGVSPSGGNFAPLPLGASPSQFTPPSSYSQISVGSPGHYGPTSPARGTSHGSPLGKSAAVSQFNRRKNWGHSGSPQTQETTFSSHWHGQYPDSLCQAEGTSQAPGSSPSYLKSNINPGNWKQRGSVSANQNIPSMNNPGSNMNSQSTDLIHDSVETGFSLPDPGDWDPNYSDELLLQEGGSDESCLTTEFGRSMNLGSSEPWSGFGRLDHVSNSSSSITMQRINGPSQTFSNVEMGSPPTHDPQAAYIPSISKPFHLMPHVLQNSPSRFGHQSVQRFTHGRPPQGSDWNQIKIQAPSGFSNVGPRSPRNASFTGSMTWGRRMNPPISSIPPISNIPPTSRSRKDYARID	969

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g02090	969	SUPERFAMILY	Protein kinase-like (PK-like)	136	505	IPR011009	-
	Vifa4g02090	969	MobiDBLite	consensus disorder prediction	916	969	-	-
	Vifa4g02090	969	CDD	PKc_YAK1	142	483	-	-
	Vifa4g02090	969	MobiDBLite	consensus disorder prediction	632	746	-	-
	Vifa4g02090	969	FunFam	Dual specificity tyrosine-phosphorylation-regulated kinase 1A	105	221	-	-
	Vifa4g02090	969	Gene3D	Transferase(Phosphotransferase) domain 1	223	484	-	-
	Vifa4g02090	969	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	17	486	-	-
	Vifa4g02090	969	MobiDBLite	consensus disorder prediction	1	36	-	-
	Vifa4g02090	969	SMART	serkin_6	142	483	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa4g02090	969	MobiDBLite	consensus disorder prediction	665	746	-	-
	Vifa4g02090	969	Gene3D	Phosphorylase Kinase; domain 1	106	222	-	-
	Vifa4g02090	969	ProSitePatterns	Protein kinases ATP-binding region signature.	148	171	IPR017441	GO:0005524
	Vifa4g02090	969	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	265	277	IPR008271	GO:0004672\|GO:0006468
	Vifa4g02090	969	MobiDBLite	consensus disorder prediction	640	657	-	-
	Vifa4g02090	969	MobiDBLite	consensus disorder prediction	7	36	-	-
	Vifa4g02090	969	MobiDBLite	consensus disorder prediction	916	942	-	-
	Vifa4g02090	969	Pfam	Protein kinase domain	142	483	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa4g02090	969	ProSiteProfiles	Protein kinase domain profile.	142	483	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g02090	Vifa-Chr4	642868718	642881135	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g02090	138	370	MAP Kinase Gene Family	AT1G18150	34.677	2.68e-32	131

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-YAK	Vifa4g02090		Pkinase	1.9e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g02090	K18670		-	gmx:100792777	1626.3