Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02087 ATGACGCACAATGGCGCCCACGCCGTCGCCAGCTACGAAGGTGCTACGCTCCATTTCCGATCCGACCCCGACGATTCTGTTGCAATCGCACCTCTCACCGTTCCAACCATGTGGCCAGACCTTATTCAGAAATCCAAAGATGGAGGAATTGATGTCATTGAGACTTATGTTTTCTGGAACTTACACGAACCTGTTCGACGCCAGGTTCTGTTCTTTTTCATTGTCTTTCCACTTTCATATTGTTATTCTTCTGTCTTTTACATTGCAGTTTTTAGCAGCAGCAGGTCTATATGTTCATCTCCGGATCGGTCCATACGCTTGTGCAGAATGGAATTACGGTGGTTTCCCTCTTTTGTATGGTTGTTTCTTGGATTCTACTGGGTAACTGCTGGTGGTCAGAGTTTGACAAGGGTTTCACCTCAGCTTTACTGGCTCTGTATCACATTTCTTGCTTTCGACGTTGCAATTGTTGTGATTTGTGTTACTGCTGCGTGTCTCATTGGAATTGCCGTTTGCTGTTTTCTTCCATGCATACTTGCTATTTTGTATGCAGTGACTGATCAGGAAGGGGCAACCAAGGAAGAGATTGACCTGTTGCCAAAATACAAGTTCAGAATAATAAAGGAACTTAAAAAAGAAGGTGATGCCCAAGAATCATCGAGAGGAGTGATGACGGAATGTGACAGTGGTTCAGCTTCTGAGCATATTATTGCCTTAGAAGATGCAGAATGTTGTATCTGCCTTTCGGCCTATGATGATGAAGCTGAACTTAGAGAACTTCCTTGCAATCACCATTTTCATTGCACATGCATTGACAAATGGCTGCTCATCAATGCCACCTGTCCTCTCTGCAAGTTTAACATTTTGAGCACTGATAACCTCCAAGAAGTTTGA 894 0.4385 MTHNGAHAVASYEGATLHFRSDPDDSVAIAPLTVPTMWPDLIQKSKDGGIDVIETYVFWNLHEPVRRQVLFFFIVFPLSYCYSSVFYIAVFSSSRSICSSPDRSIRLCRMELRWFPSFVWLFLGFYWVTAGGQSLTRVSPQLYWLCITFLAFDVAIVVICVTAACLIGIAVCCFLPCILAILYAVTDQEGATKEEIDLLPKYKFRIIKELKKEGDAQESSRGVMTECDSGSASEHIIALEDAECCICLSAYDDEAELRELPCNHHFHCTCIDKWLLINATCPLCKFNILSTDNLQEV 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02087 297 Pfam Glycosyl hydrolases family 35 34 71 IPR031330 -
Vifa4g02087 297 SUPERFAMILY RING/U-box 234 292 - -
Vifa4g02087 297 ProSiteProfiles Zinc finger RING-type profile. 244 285 IPR001841 -
Vifa4g02087 297 SUPERFAMILY (Trans)glycosidases 32 69 IPR017853 -
Vifa4g02087 297 PANTHER TARGET OF ERK KINASE MPK-1 112 291 - -
Vifa4g02087 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 296 IPR013083 -
Vifa4g02087 297 SMART ring_2 244 284 IPR001841 -
Vifa4g02087 297 Pfam Ring finger domain 243 285 IPR001841 -
Vifa4g02087 297 Gene3D Glycosidases 12 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02087 Vifa-Chr4 640353870 640356215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02087 117 296 C3H Transcription Factor Family AT1G68070 54.645 1.22e-64 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02087 - - tpra:123891576 327.791