Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02073 ATGGCTAAAAACAATCTATTTTCCATATTAATCATAGTTTTCAGTTTGTTGTTTGGACTATTCAATCCTGCATGCTCAATTTCCTTCAACTTCTCAAACTTTCAACCAAACTTATATCTAATAAACTTCCAAGGTGATGCATTTTCCTCCAACAATGTTCTTCAGCTAACAAAAAACCAGCTGGATGGCCCCATTACAAGCAGCACCGGCCGCGCTTCATTCGACCAACCGGTGAAGCTTTACGATAAACAAACACGAGAGCTGACTGACTTCACAACACATTTCACCTTCATTATGAGATCTGTTATTGAGACGCGGTTTGGCGACGGTTTATCCTTCTTCATGGCTCCTTTTCAATCTGATGTCCCTAAAAACTCGTCTGGGGGCTACCTTGGCTTGTTCAGCAATGAAACTGCATTTGATACTAGTAAAAACCAAATAGTAGCTGTTGAGTTTGATAGTTTTAGGAATGATTGGGATCCGAGTTCGGATCATGTTGGGATCAATGTTAACTCGATTCAATCGGTTCAAAATGTTACTTGGAAAACAAACATTAAAAACGGGTCGATCGCGAATGCTTGGATATCGTATAACTCTACCACAAAAAACCTTTCTGTTTTTCTTACTTATGCTGATAATCCAACTTTTCATGGAAACTCTAGTCTTTCACATGTTATTGATTTGAGAGATTTTTTGCCTGAATATGTTAGGATTGGTTTTTCAGCTGCTACCGGTCAATGGATTGAAATACACAACATTCTATCTTGGTCATTCAACTCAAATTTGGAAAGTGGTAATGGTAAAAACATCAAGGTTGGTTTAGGAGTTGGTTTAAGTGTTGGTTTTTGTTCTTTATCTTGTTTTGTATGTGTTTTGTGGTTCACTCTTTGGAGAAAAAGAAAAGGAGTTCTAAATAAAGGTAAAAGGGACAATAACATTACAGGTTTGGATTATTCTATAGATGATGATGAATTTGAGAGAGGAACTGGTCCAAAAAAGTTCACTTACAAACAACTAAGCAATGCAACAAATGGTTTCGACATAAAAGGAAAGCTTGGAGAAGGTGGATTTGGAGGTGTTTACAAAGGATTACTTTCAAAGAAAACAAAGATGGAAGTTGCTGTGAAAAGGGTTTCAAAAGGGTCAAGACAAGGAAAAAAAGAATACGTATCAGAAGTAAGAATAATAAGCAAACTAAGACATAGAAACTTAGTTCAACTCTTAGGTTGGTGTCATGAAAAAAATGAACTTTTACTTGTTTATGAGTACATGCCTAATGGAAGTCTTGACTTTCATCTATTTGGAAAAGGGGTTATGCTAAGTTGGAATATAAGATACAAAATAGCATTAGGTTTGGCTTCATCTCTTCTTTATTTGCATGAAGAGTGGGAACAATGTGTGCTACATAGAGATATTAAGTCAAGTAATGTAATGTTGGATGCAAATTTTAACTCCAAGCTTGGTGATTTTGGTCTTGCAAGGCTAGTGGATCATGAACTTGGTTCACAAACAACTGTTTTGGCAGGGACAATGGGATATTTAGCACCTGAATGTGTGACAACAGGGAAATCTAGTAAAGAATCTGATGTTTATAGTTTTGGAGTTGTTGCACTCGAGATCACATGTGGTAGGAGGCCGGTTGAGGCAAGAGAAGAGGCTAGGAAAGTTAGGCTTGTGGAATGGATTTGGGATTTGTATGGTAAAGGTGAGTTGTTGGAAGGGGTTGATAAAGGGTTGAACTTGGAGTTTGATGAGAAACAAATGGAGTGTTTGATGATTGTTGGATTGTGGTGTTGTCACCCTGATTTTACTATGAGGCCTTCTATAAGACAAGTGATTAATGTTTTGAATTTTGAAGGTGCTTTGCCTAGTCTTCCATCAAAGTTACCTGTGCCTATGTACTTTGCTCCTCCTATGGATATGTGTAGATTTTCTTATAATTCTGATGGTCTTACAAACACAACTAGAGGCTCTTCTACTTACTCATCTTTGTCAGCAGGGTCTAGGAAATCTCTATTGTAG 2022 0.3719 MAKNNLFSILIIVFSLLFGLFNPACSISFNFSNFQPNLYLINFQGDAFSSNNVLQLTKNQLDGPITSSTGRASFDQPVKLYDKQTRELTDFTTHFTFIMRSVIETRFGDGLSFFMAPFQSDVPKNSSGGYLGLFSNETAFDTSKNQIVAVEFDSFRNDWDPSSDHVGINVNSIQSVQNVTWKTNIKNGSIANAWISYNSTTKNLSVFLTYADNPTFHGNSSLSHVIDLRDFLPEYVRIGFSAATGQWIEIHNILSWSFNSNLESGNGKNIKVGLGVGLSVGFCSLSCFVCVLWFTLWRKRKGVLNKGKRDNNITGLDYSIDDDEFERGTGPKKFTYKQLSNATNGFDIKGKLGEGGFGGVYKGLLSKKTKMEVAVKRVSKGSRQGKKEYVSEVRIISKLRHRNLVQLLGWCHEKNELLLVYEYMPNGSLDFHLFGKGVMLSWNIRYKIALGLASSLLYLHEEWEQCVLHRDIKSSNVMLDANFNSKLGDFGLARLVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEITCGRRPVEAREEARKVRLVEWIWDLYGKGELLEGVDKGLNLEFDEKQMECLMIVGLWCCHPDFTMRPSIRQVINVLNFEGALPSLPSKLPVPMYFAPPMDMCRFSYNSDGLTNTTRGSSTYSSLSAGSRKSLL 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02073 673 SUPERFAMILY Protein kinase-like (PK-like) 330 642 IPR011009 -
Vifa4g02073 673 Gene3D - 25 272 - -
Vifa4g02073 673 Pfam Legume lectin domain 27 265 IPR001220 GO:0030246
Vifa4g02073 673 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 265 IPR013320 -
Vifa4g02073 673 ProSiteProfiles Protein kinase domain profile. 346 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02073 673 FunFam Lectin-domain containing receptor kinase A4.3 424 636 - -
Vifa4g02073 673 Pfam Protein kinase domain 347 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02073 673 PANTHER - 44 618 - -
Vifa4g02073 673 ProSitePatterns Legume lectins alpha-chain signature. 232 241 IPR000985 -
Vifa4g02073 673 SMART serkin_6 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02073 673 FunFam L-type lectin-domain containing receptor kinase IX.1 25 271 - -
Vifa4g02073 673 Gene3D Phosphorylase Kinase; domain 1 331 423 - -
Vifa4g02073 673 FunFam L-type lectin-domain containing receptor kinase IX.1 331 423 - -
Vifa4g02073 673 ProSitePatterns Protein kinases ATP-binding region signature. 352 376 IPR017441 GO:0005524
Vifa4g02073 673 Gene3D Transferase(Phosphotransferase) domain 1 424 636 - -
Vifa4g02073 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Vifa4g02073 673 ProSitePatterns Legume lectins beta-chain signature. 148 154 IPR019825 -
Vifa4g02073 673 CDD lectin_legume_LecRK_Arcelin_ConA 27 262 IPR001220 GO:0030246
Vifa4g02073 673 CDD STKc_IRAK 360 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02073 Vifa-Chr4 604557590 604559611 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02073 8 634 Receptor kinase-like Gene Family AT5G10530 51.800 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa4g02073 Pkinase 7.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02073 - - gmx:100777201 1008.82