Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02067 ATGGAGAGATTAGAGAGAAGGAGCAAGAAGGATCAAGAAAAGAAAGAGAAGAGAGCAAGAAACTTTGTCGAATTAATAACCGGTAACAATAACAACAACAACGGTGTTAAGAAAGAGATTTTGAATGCATATGACAACAACAACAATAATGAGATGTTAATAGGGTCCCCAATACCATCACCTAGAGGCGTATTTGAGGTACTGATATCGGATTCAGACAGCACCGGAAGCGAAAACTACAGCGGTTTGCAACGGACGCCACGTGGAGGAAAGTTATCACCAAGTGGAGGAGGAGGAGATGGACATCAATGGAGGAATATGATTGATGCATTGAGGTTTAAGTCTGTGAGAAGATTTTCTACCATTCCTTTGCTTGCTGCTAGCTATGAAATTTCTAGGAGAAGCTTGAGGAATAAATTGGCTCGTGCAAGAACTGGTAACGATGACGAGAATGATTTTGATGGTTCTATTGATCTTGAAGGAATTACTAAGCCTTCTTGGAGAAATTTTAGTTACGAAGATCTTGCAGCTGCAACCGATAATTTCAACCCGGAGAACATGATTGGAAAAGGTGGCCATGCAGAAGTGTACAAAGCAAGGTTACCTGATGGACAAGTTGTGGCAGTAAAGAGACTAATGAGGAATGAAAAAGAAGCTGGAGATAAAGCTGGTGATTTCTTATCAGAGCTTGGGATTATTGCTCACATCAACCATCCAAATGCAACAAGACTCATTGGTTTCGGAATCGATCGCGGACTCTACTTTGTTCTACAATTTGCTTCACACGGAAGCCTTTCTTCTATGCTCTTTGGTTCTGAATGTTTGGAATGGAAGAGAAGGTTCAAGGTAGCAGTTGGAGTGGCCAAAGGTTTGCAGTATCTTCATCAAGATTGTCCAAGGAGAATCATTCATAGAGACATCAAAGCCTCAAACATATTACTCAACCATAATGATGAAGCTGAGATTTCTGATTTTGGATTGGCAAAATGGCTTCCTGATAAGTGGGCACACCATGTTGTTTTTCCAATAGAAGGCACATTCGGGTATTTAGCTCCAGAGTATTTCATGCATGGACTTGTGGATGAAAAGACTGATGTGTTTGCATTTGGGGTATTGTTACTTGAGCTCCTGACTGGTCGACGTGCGGTTGATTCCAACAGCAGGCAAAGCCTTGTCATTTGGGCTAAACCGTTATTGGATGCAAAGCAAGTGAAAGAAATAGCAGATCCAAGACTAGAAGAACAATATGATCCAATTGAAATGAAGATTGCCATGGCAACAGCTTCCATGTGTATCCACCACATGTCCTCTAAAAGGCCATTCATGAATCAGGTTGTGCTACTATTGAAGGGAGAAGAGGTGGCTATGGACCTTACTCAAAAATCAATAGCACAGAGGTCACTCTTGTTAGATGCTTGTGATTTAGAAGACTATACTTGTTCAAATTATTTGAATGATATCAATCGGCACAAGCAATTAATCATGGAGTGA 1491 0.4085 MERLERRSKKDQEKKEKRARNFVELITGNNNNNNGVKKEILNAYDNNNNNEMLIGSPIPSPRGVFEVLISDSDSTGSENYSGLQRTPRGGKLSPSGGGGDGHQWRNMIDALRFKSVRRFSTIPLLAASYEISRRSLRNKLARARTGNDDENDFDGSIDLEGITKPSWRNFSYEDLAAATDNFNPENMIGKGGHAEVYKARLPDGQVVAVKRLMRNEKEAGDKAGDFLSELGIIAHINHPNATRLIGFGIDRGLYFVLQFASHGSLSSMLFGSECLEWKRRFKVAVGVAKGLQYLHQDCPRRIIHRDIKASNILLNHNDEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELLTGRRAVDSNSRQSLVIWAKPLLDAKQVKEIADPRLEEQYDPIEMKIAMATASMCIHHMSSKRPFMNQVVLLLKGEEVAMDLTQKSIAQRSLLLDACDLEDYTCSNYLNDINRHKQLIME 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02067 496 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 261 463 - -
Vifa4g02067 496 SMART serkin_6 182 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02067 496 Gene3D Transferase(Phosphotransferase) domain 1 261 468 - -
Vifa4g02067 496 PANTHER OS08G0249100 PROTEIN 21 473 IPR046958 -
Vifa4g02067 496 ProSitePatterns Protein kinases ATP-binding region signature. 188 210 IPR017441 GO:0005524
Vifa4g02067 496 Pfam Protein kinase domain 185 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02067 496 ProSiteProfiles Protein kinase domain profile. 182 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02067 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
Vifa4g02067 496 SUPERFAMILY Protein kinase-like (PK-like) 166 451 IPR011009 -
Vifa4g02067 496 Gene3D Phosphorylase Kinase; domain 1 156 257 - -
Vifa4g02067 496 Coils Coil 1 21 - -
Vifa4g02067 496 MobiDBLite consensus disorder prediction 75 101 - -
Vifa4g02067 496 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 158 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02067 Vifa-Chr4 601383816 601387287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02067 155 472 Trihelix Transcription Factor Family AT1G70460 40.549 3.55e-68 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vifa4g02067 Pkinase 6.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02067 - - tpra:123924518 815.839