Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02066 ATGGATGCTACTCAAACAGAAAAAATATATGTTGCAGTTGGCTATGATGTGCTAGATGGATTTCAAACATTGGATTGGGCTCTCAAAAAATGGAATTCTCATCCAAATATTTCTATTATCATTTTACATGTCAAATACAACCCTTCCAATCATCATGTTTATACACTCCTTGGAAAACTCCCTGCAAAAGGAGCATGTGAAGAGAAACTAGAACGTATAAGGAACTATGAGCAAAACATTATCAACAATTTGCTTTCCAAGTATATAGCTTTATGTGATAAAGTTCCAGCTGAAACATTTGAGGTTGAGAAATTTGATAAACCAATGCAAAATCTCACTATAGATTTGATCCTTGGTCTTGGAATAACGAAATTGGTCATTGGATTTTCATTCATGAGACCTTCCATGAAATCGAAAGATGCCATGAACGGATTGTTCTACGTTCATCAGCACAAGCCGGATTTCTGTGAATTGTTCATTATCTGTGGAGGGAAGCAAGTTTCACCGAGAGTGAAAAACGATGAGATAACCATGGAGGATGATAGCGGCGTCAAGGTTGCCAAAATGAGAGATTATAAGACGAATTTTAAAGATTGTATAGTGAGAATATGTTGTGATAAAAGTACTATTGATTCCAACCAAGGGTGTTCTAGCAGATCATCGACAAGTTCGGAGTCTCAGATTGATCAAAATGAGTGGGAATTTTATATCCGAGAAATCGATAATTATTTTCAAGAGTTAGTGTCCTTAAATATGGAGGAAGGAATTTATGGACAAGATGATGATGATTCTTACTTTAGTCCAATTGAGCCATTTGTCCAACAACTTAAAAACTCTCATAATAAGAGTGGTGCAGAGAAACTTAAGATCCTCATAGATAAACTGAATGAAGCTTATGATACAATCCAAATGAAAAGAAAAGAAGAAAAGGAGAATTTGGAGAGACACGCAAAAGCTGAATGGGCGTTTTATATATCCAATCTTCGGGAAGAAGAGCTTGAATATCTAAAAAATGAAGAAGTGGCAAGAAAGGAAGAGCTAAATAAGGAACTAAATATTGAAAAAGAACAAATTCAAATAATCAAAATGGATATTGAAGATATCGAGCAAAGTCTTAGCTCAATGGAAGAGTTACAACTAGAGCTTCAAAATAAACTTCATGATTCCACATTGGAAATTTCAGAATGTGAAACCGAATTCGAGAACATAATGGCTGAAAGAACAAAGATGTTAATGGAAATAGAGGAGCTAAGTAGACAAAGAGATGTGTTGAACAAAACGATTATGTTTTTCAAAGAAAAAGATGGCAAAGAAATGTGTAATAAGCTAACAGAGAAGAGTTGTTGTTTAGAAGAGTACACAGAGGAAGAGATCATCATGGCTACCAACAATTTTTCAGAATACTTAAGGTTGACATCTGGTAGGGATTGGAGTAATGTTTATAGAGGAAACATTAATAACTCAGATGTTACAATCATGATGATTGATTCTACTCTTGCCTTGTCCCAACAAGATTTCCAAGCTAAGTTGATGTATCTTTGTAATATTCGGCATCCTCATCTGGTCGCCGTATTGGGCTTCTGTTCGGACCCGAAATGCTTAGTTTTTGAATACATGCACAATGGCACCTTGGAAGAGGCCCTACTTTGCAAGACAACAAGGGGCGTAAGCTATCAAGATTGCATAAGGATAGCCAAAGAAGTTTGTTCTGGGATGGGCTTTCTCAATACACTTCAGCCCAGGTCCATCATTCATTGTCACATTTCTCCATCCAACATCCTCCTTGACAAAAACCTTGTTGCAAAGGTGGCTGGGTTCGAGCTTCATGGATGCAACGAAGAATGTAATGTAAAGTCAGATATGAAGGCAATAGGAGTTTTGTTGTTGCATCTATTGACTGGAAGAGGAAATTGGACAATCGATATGGAAGCTTTTTCTGATGAGATTGGTGATGAATGGCCATTTGATGTTGCAAGAGAAATTTTGGAGTTAGCAATAAGGTGCATTTCCAGTGAAGAAATGATCATAACAAGAGTTATGAAAGAACTCAATGAGATCAAAGGAAAGGGTTGTGACTCCATTAAAGTTCCTAACAGTTTCCTGTGTCCAATCCTTAAGAAGGTAATGAGAAATCCGCACATAGCAGCAGATGGATATTCTTATGAGCTAGAAGCAATAGAAGAGTGGTTGGATTCTGGAAACAAAATATCACCTAAAAGCTTGAGGCTCGACAATACATTACTTTTCCCGAATCATAACCTTCGTTCCCTAATACAGTACTGGCATAGTAACATATCAGCAACAAATAAAAGAATTATCTATTGA 2325 0.3647 MDATQTEKIYVAVGYDVLDGFQTLDWALKKWNSHPNISIIILHVKYNPSNHHVYTLLGKLPAKGACEEKLERIRNYEQNIINNLLSKYIALCDKVPAETFEVEKFDKPMQNLTIDLILGLGITKLVIGFSFMRPSMKSKDAMNGLFYVHQHKPDFCELFIICGGKQVSPRVKNDEITMEDDSGVKVAKMRDYKTNFKDCIVRICCDKSTIDSNQGCSSRSSTSSESQIDQNEWEFYIREIDNYFQELVSLNMEEGIYGQDDDDSYFSPIEPFVQQLKNSHNKSGAEKLKILIDKLNEAYDTIQMKRKEEKENLERHAKAEWAFYISNLREEELEYLKNEEVARKEELNKELNIEKEQIQIIKMDIEDIEQSLSSMEELQLELQNKLHDSTLEISECETEFENIMAERTKMLMEIEELSRQRDVLNKTIMFFKEKDGKEMCNKLTEKSCCLEEYTEEEIIMATNNFSEYLRLTSGRDWSNVYRGNINNSDVTIMMIDSTLALSQQDFQAKLMYLCNIRHPHLVAVLGFCSDPKCLVFEYMHNGTLEEALLCKTTRGVSYQDCIRIAKEVCSGMGFLNTLQPRSIIHCHISPSNILLDKNLVAKVAGFELHGCNEECNVKSDMKAIGVLLLHLLTGRGNWTIDMEAFSDEIGDEWPFDVAREILELAIRCISSEEMIITRVMKELNEIKGKGCDSIKVPNSFLCPILKKVMRNPHIAADGYSYELEAIEEWLDSGNKISPKSLRLDNTLLFPNHNLRSLIQYWHSNISATNKRIIY 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02066 774 Coils Coil 285 319 - -
Vifa4g02066 774 SMART Ubox_2 699 761 IPR003613 GO:0004842|GO:0016567
Vifa4g02066 774 PANTHER OS02G0152300 PROTEIN 9 759 - -
Vifa4g02066 774 ProSiteProfiles U-box domain profile. 695 768 IPR003613 GO:0004842|GO:0016567
Vifa4g02066 774 CDD RING-Ubox_WDSUB1-like 697 751 - -
Vifa4g02066 774 Pfam Protein tyrosine and serine/threonine kinase 477 609 IPR001245 GO:0004672|GO:0006468
Vifa4g02066 774 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 770 IPR013083 -
Vifa4g02066 774 Coils Coil 330 388 - -
Vifa4g02066 774 Coils Coil 400 434 - -
Vifa4g02066 774 SUPERFAMILY RING/U-box 692 764 - -
Vifa4g02066 774 Gene3D Transferase(Phosphotransferase) domain 1 540 685 - -
Vifa4g02066 774 Pfam U-box domain 696 763 IPR003613 GO:0004842|GO:0016567
Vifa4g02066 774 SUPERFAMILY Protein kinase-like (PK-like) 450 641 IPR011009 -
Vifa4g02066 774 ProSiteProfiles Protein kinase domain profile. 466 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02066 774 Gene3D Phosphorylase Kinase; domain 1 444 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02066 Vifa-Chr4 601374293 601377807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02066 3 767 U-box Gene Family AT5G65500 41.358 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa4g02066 PK_Tyr_Ser-Thr 2e-20 CL0016