Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02064 ATGTCAAACCTTTCTAATGCGATACAATCGAGTAAGAGTCACGAAGAGAGAAAATCAGAAGCAGAACAAGAGTTAGAAGATGAAGAAAGTTTCTCACATGCAATACAACTCTGCAGCTCTACTGTGCTACCAATGGCACTTCAATCTGCAACCGAGCTTGGTGTTTTTGATGTGTTGCTAAAAGCTGATCAAGAAAGACTTGGATCCTTTCGTAGACTTTATAGTATGGCTCCTGTTGCTAGATTCTTTGCTCGTGATTCTGATGGTGTTTCGCTAGGACCCTTATTGGCTTTGAATCAAGATAAAGTCTTCTTAGCTACCTGGCCGGAGCTGAAGAATGCGATTCAAGAAGGGGGTGTACCATTCGACAGGGTTTATGGCACACATGCCTTTAATTATCCGAGTTTGGACTCGAGGTTTAATCAAGTTCTCAATACAGGTATGCTCAATCATACCAAAGTAGTTATGAAGAAGATTCTTGAATGCTACAAAGGTTTTGATAATGTAAAAAAGCTTGTGGATGTTGGAGGTGGTCTTGGGGTCAACATTAACTCAGTCACTTCCAAATACCCTCATATTAAGGGTATTAATTTTGACTTGCCTCATGTCATACAACATGCTCCTTCTTATCCAGGAGTTGAACATATTGGTGGAGATATGTTTAAAAGTGTGCCTAAAGGAGATGCCATCTTTATGAAGTGCATACTTCATGGTTGGAACGATGAACATTGCTTAAAGCTTTTGAAGAATTGTTATGATGCTATCCCTGATGATGGAAAGGTTATTGTTTTGGAGGCAGTTCTTCCTATTATACCTGAAAATGGATATGCTTCCAAGTGTATCTCTCAAGTGGATGTTTTGATGATGATTCTAAATCCAGGAGGAAAAGAACGAACTAAGCAAGAATTTGAAGATTTGGCAACAAGAGTTGGATTTAGTGGCATCAAATATGAATGTTGTGTTCGTAACTTTTGGATTATGGAGTTTTTTAAGTAA 996 0.3855 MSNLSNAIQSSKSHEERKSEAEQELEDEESFSHAIQLCSSTVLPMALQSATELGVFDVLLKADQERLGSFRRLYSMAPVARFFARDSDGVSLGPLLALNQDKVFLATWPELKNAIQEGGVPFDRVYGTHAFNYPSLDSRFNQVLNTGMLNHTKVVMKKILECYKGFDNVKKLVDVGGGLGVNINSVTSKYPHIKGINFDLPHVIQHAPSYPGVEHIGGDMFKSVPKGDAIFMKCILHGWNDEHCLKLLKNCYDAIPDDGKVIVLEAVLPIIPENGYASKCISQVDVLMMILNPGGKERTKQEFEDLATRVGFSGIKYECCVRNFWIMEFFK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02064 331 Coils Coil 4 31 - -
Vifa4g02064 331 Gene3D - 10 66 IPR036388 -
Vifa4g02064 331 Pfam O-methyltransferase domain 108 313 IPR001077 GO:0008171
Vifa4g02064 331 Gene3D Vaccinia Virus protein VP39 141 321 IPR029063 -
Vifa4g02064 331 SUPERFAMILY "Winged helix" DNA-binding domain 26 86 IPR036390 -
Vifa4g02064 331 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 331 IPR016461 GO:0008168
Vifa4g02064 331 FunFam Caffeic acid O-methyltransferase 84 331 - -
Vifa4g02064 331 MobiDBLite consensus disorder prediction 1 26 - -
Vifa4g02064 331 PIRSF O-mtase 11 70 IPR016461 GO:0008168
Vifa4g02064 331 PIRSF O-mtase 61 331 IPR016461 GO:0008168
Vifa4g02064 331 Gene3D - 67 159 IPR036388 -
Vifa4g02064 331 PANTHER O-METHYLTRANSFERASE 37 316 IPR016461 GO:0008168
Vifa4g02064 331 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 88 329 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02064 Vifa-Chr4 601339316 601340793 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02064 24 331 Monolignol Biosynthesis Gene Families AT5G54160 45.845 7.85e-115 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02064 K13066 - gmx:100803633 481.87