Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02062 ATGTCAAACCTTTCCAATGGCATAGATTTGAATGAGAACAAAGAGAGAAAATCAGAAGCAGAACAAGAGTTAGAAGATGAAGAAGGTTTCTCATATGCAATACAACTTTGCAGCTCTACTGTGCTACCAATGGCACTTCAATCTGCAACCGAGCTTGGTGTTTTTGATGTGTTGCTAAAAGCTGGTAACGATGCTCCACTCTCTGCCCATGAGGTTGCTTCTCGTCTTTCAATTACCAATCCCGATGCACCCAAAATGTTGGATCGGATCCTTGCTCTTCTTGCATCTAATTCTATATTGAAGTGTTTGGTTCTTCAAGATCAAGAAAGACTTGGATCCTTTCGTAGACTTTATAGTATGGCTCCTGTTGCTAGATTCTTTGCTCGTGATTCTGACGGTGTTTCGCTAGGACCCTTATTGGCTTTGAATCAAGATAAAGTCTTCTTAGCTACCTGGCCGGAGCTTAAGAATGCAATTCGAGAAGGGGGTGTGCCATTCGACAGGGTTTATAGCATGCATGCCTTTGATTATTCGAGTTTGGACTCGAGGTTTAATCAAGTTTTCAATACAGGTATGATCAACCATAGCAAAGCAGTTATGAAGAAGATTCTTGAATGCTACAAAGGTTTTGATAATGTAAAAAAGCTTGTGGATGTTGGAGGTGGTCTTGGGGTCAACATTAACTCAGTCACTTCCAAATACCCTCATATTAAGGGTATTAATTTTGACTTGCCTCATGTCATACAACATGCTCCTTCTTATCCAGGAGTTGAACATATTGGTGGAGATATGTTTGAAAGTGTGCCTAAAGGAGATGCTATCCTTTTGAAGTGTGTACTTCATGATTGGAGCGATGAACATTGCTTAAAGATTTTGAAGAATTGTTATGATGTTATCCCTGATGATGGAAAAGTTATTGTTTTGGAGGCAGTTCTTCCTATTATACCTGAAAATGGATATGCTTCGAAATGTGTCTCTCAAGTAGATGTTTTGATGATGACTTTAAATCCGGGTGGAAAAGAACGAAGTAAACAAGAATTTGAAAATTTGGCAACAAGAGTTGGATTTAGTGGCATCAAGTATGAAAGTAGTGTTCGTGGTTTTTGGATTATGGAGTTTTTTAAATAG 1128 0.3874 MSNLSNGIDLNENKERKSEAEQELEDEEGFSYAIQLCSSTVLPMALQSATELGVFDVLLKAGNDAPLSAHEVASRLSITNPDAPKMLDRILALLASNSILKCLVLQDQERLGSFRRLYSMAPVARFFARDSDGVSLGPLLALNQDKVFLATWPELKNAIREGGVPFDRVYSMHAFDYSSLDSRFNQVFNTGMINHSKAVMKKILECYKGFDNVKKLVDVGGGLGVNINSVTSKYPHIKGINFDLPHVIQHAPSYPGVEHIGGDMFESVPKGDAILLKCVLHDWSDEHCLKILKNCYDVIPDDGKVIVLEAVLPIIPENGYASKCVSQVDVLMMTLNPGGKERSKQEFENLATRVGFSGIKYESSVRGFWIMEFFK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02062 375 FunFam Caffeic acid O-methyltransferase 128 375 - -
Vifa4g02062 375 Gene3D Vaccinia Virus protein VP39 128 375 IPR029063 -
Vifa4g02062 375 SUPERFAMILY "Winged helix" DNA-binding domain 25 130 IPR036390 -
Vifa4g02062 375 MobiDBLite consensus disorder prediction 1 24 - -
Vifa4g02062 375 Pfam Dimerisation domain 44 95 IPR012967 GO:0046983
Vifa4g02062 375 FunFam Caffeic acid 3-O-methyltransferase 11 127 - -
Vifa4g02062 375 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 34 375 IPR016461 GO:0008168
Vifa4g02062 375 Pfam O-methyltransferase domain 152 357 IPR001077 GO:0008171
Vifa4g02062 375 PIRSF O-mtase 10 375 IPR016461 GO:0008168
Vifa4g02062 375 Gene3D - 10 127 IPR036388 -
Vifa4g02062 375 Coils Coil 10 30 - -
Vifa4g02062 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 373 IPR029063 -
Vifa4g02062 375 PANTHER O-METHYLTRANSFERASE 36 360 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02062 Vifa-Chr4 601258082 601259557 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02062 23 375 Monolignol Biosynthesis Gene Families AT5G54160 51.977 2.41e-137 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02062 K13066 - gmx:100803633 530.791