Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02061 ATGGCTATCCAAGAAGCTTTGTTAGACAAGCCAAGAAAATCGATTCCAAAAACATTTTGGTTAATCCTCTCTTTAGCTGCTATCATAAGCTCATCAGCCCTTATTGCTACTCATCTCAAGAAACCAACCTCCTTCTTCCACTTCTCTTCTGCTCCAAATCTGTGTCAGCATGCTCTTGATACAGAAGCATGCTTAACTCATGTATCTGAAGTTGTTCAAGGCCCAACCTTGGCTAGCACAAAAGACCACAAATTGAGTACACTCATATCCTTATTAACCAAGTCCACCACACACATTCAAGAAGTCATGAACAGAGCCAATGTTATAAAACGCCGAGTTAACGGTCCTAGAGAGGAGACAGCTTTGAATGACTGTGAGCAACTAATGGACTTGTCCATGGATAGAGTTTGGGAATCAGTGTTGACTTTAACAAAAAATAACGTTGAATCACAGCAAGATGCACACACATGGCTAAGTAGTGTACTCACTAACCATGCAACTTGTTTGGATGGTTTAGAAGGTGCGTCTAGGGCCGTGATGGAAAATGATCTTGAGGACTTGATATCCAGAGCTAGATCTTCTCTTGCTGTGCTTGTTTCTGTCTTACCTAAACCGGATCACAAGGAATTCATTGATGAATCATTGAATGGGGAATTTACCTCGTGGGTTTCAAACAAGGATAGGAGGCTTTTTGAGTCTAGAATTGGGGACATTCAGGCCAATGTTGTGGTGGCTAAAGATGGGAGCGGTAAGTTCAAGACTGTGGCTGAGGCTGTGGCAACTGCACCAGACAACGGTAAGACAAGGTATGTTATCTATGTGAAAAGGGGAACCTACAAAGAGAAGGTAGAAATCGGTAAGAAAAAGACGAATGTTATGCTTGTCGGTGATGGTATGGATGCAACAATAATCACAGGCAGCTTAAATTTTATCGATGGAACAACCACTTTCAATAGTGCAACTGTTGCTGCTGTTGGGGATGGGTTTATAGCTCAGGACATTGGGTTCCAAAACACGGCAGGCCCAGAAAAGCACCAGGCAGTTGCTCTCCGTGTAGGCGCGGATCAATCTGTCATCAACCGTTGTAAAATTGACGCATTTCAAGACACTCTTCTCAGAACTTCATCTCTCCAAAACTCACTCTCTAACTGCTTCTCTACACAAAATCATTTTCATCAACAAGTCCGAATCGGCTTCTCAACAACGATAATCAACATCACGCATACTTCATCAAAACTGCATCATCATCATGTTCAATGA 1260 0.4238 MAIQEALLDKPRKSIPKTFWLILSLAAIISSSALIATHLKKPTSFFHFSSAPNLCQHALDTEACLTHVSEVVQGPTLASTKDHKLSTLISLLTKSTTHIQEVMNRANVIKRRVNGPREETALNDCEQLMDLSMDRVWESVLTLTKNNVESQQDAHTWLSSVLTNHATCLDGLEGASRAVMENDLEDLISRARSSLAVLVSVLPKPDHKEFIDESLNGEFTSWVSNKDRRLFESRIGDIQANVVVAKDGSGKFKTVAEAVATAPDNGKTRYVIYVKRGTYKEKVEIGKKKTNVMLVGDGMDATIITGSLNFIDGTTTFNSATVAAVGDGFIAQDIGFQNTAGPEKHQAVALRVGADQSVINRCKIDAFQDTLLRTSSLQNSLSNCFSTQNHFHQQVRIGFSTTIINITHTSSKLHHHHVQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02061 419 SMART PMEI_2 47 197 IPR006501 GO:0004857
Vifa4g02061 419 SUPERFAMILY Pectin lyase-like 239 389 IPR011050 -
Vifa4g02061 419 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 177 IPR035513 -
Vifa4g02061 419 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 201 IPR035513 -
Vifa4g02061 419 Pfam Pectinesterase 241 378 IPR000070 GO:0030599|GO:0042545
Vifa4g02061 419 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Vifa4g02061 419 Pfam Plant invertase/pectin methylesterase inhibitor 53 191 IPR006501 GO:0004857
Vifa4g02061 419 NCBIfam pectinesterase inhibitor domain 23 180 IPR006501 GO:0004857
Vifa4g02061 419 PANTHER PECTINESTERASE 28 378 - -
Vifa4g02061 419 Gene3D - 235 397 IPR012334 -
Vifa4g02061 419 FunFam Pectinesterase 3 52 201 - -
Vifa4g02061 419 CDD PMEI-like_4 55 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02061 Vifa-Chr4 600816844 600818176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02061 5 371 Carbohydrate Esterase AT1G11580 50.663 8.09e-115 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02061 K01051 - gmx:100815836 530.406