Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02033 ATGGAACAACCACTTCAACGCTTGAACGGAATGCCTCCGACAGAGGATGAGGAACCGGATAACCACCGCCGCCACAAAAAGACTCCACCCTCCACCGTACCAACAAACAAAACCGGTAGCTCAATACGATACCGTGGAGTCCGACGCCGTCCATGGGGCCGTTACGCAGCCGAGATAAGGGACCCACACTCCAAAGAACGCCGCTGGCTTGGAACTTTCGATACTGCCGAACAAGCAGCTCGCGCCTACGACTGCGCCGCCATATCCATGCGCGGTTCTAAAGCCCGAACCAATTTCTTTAACCCCGAAACCGAAACCACCGAACAACATCATCAACAACACCAGCAACATTGCCTTTTTCATTCTTTCAATGTTCCAAAACAGCAACAATCTCAACACCACGGCCACGTCAGCAAGCTCAACGCTGCTGATTATGTTAACCACACTTGTTCAAACACCAACGCCTCTTTTGTTCCTTCTTTTTTTCAACACTTTCATGACAAAACCGATAACATTATTTCTTCTTCAGCTTCCGCTTCAGTTTCTATGGTTGCTGTTATAAACCAAGGTTGTTATGGTAAAGATAATGTTACTGAACATATTATCGATGATGACTCGGATTTTTTTCCGAGAGAATCCTCTGGTTTGTTGGAAGAGATTGTTCATAAGTTTATGAAAAGTTCGAAAACAACAAATAATGAAAAGAAGATGAAAACTGAAAGTTTTGTTGGTTCAGTTTCTCAACCAATAAAATCTCATCATCATAACATGTTTCCTGAGAATGAGGGTTTTGGTTCAGTTTCTTTTGATCAACAGCAAGGTTTTCCTGTGCAGCAATATGAGAGTTTTCATAATGGATTTAACTTTAACAATAATGTGGCTATGTGTGTGGAGGGAAATTATCAGGCAGCAGAGTGCTCTATGATGGAAGATGTGTTTTACTATCCTGAACTTTTTCATTCTTTTGCTACTAGGATGCAAAATGTCTAA 990 0.4242 MEQPLQRLNGMPPTEDEEPDNHRRHKKTPPSTVPTNKTGSSIRYRGVRRRPWGRYAAEIRDPHSKERRWLGTFDTAEQAARAYDCAAISMRGSKARTNFFNPETETTEQHHQQHQQHCLFHSFNVPKQQQSQHHGHVSKLNAADYVNHTCSNTNASFVPSFFQHFHDKTDNIISSSASASVSMVAVINQGCYGKDNVTEHIIDDDSDFFPRESSGLLEEIVHKFMKSSKTTNNEKKMKTESFVGSVSQPIKSHHHNMFPENEGFGSVSFDQQQGFPVQQYESFHNGFNFNNNVAMCVEGNYQAAECSMMEDVFYYPELFHSFATRMQNV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02033 329 Pfam AP2 domain 43 92 IPR001471 GO:0003700|GO:0006355
Vifa4g02033 329 MobiDBLite consensus disorder prediction 13 27 - -
Vifa4g02033 329 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Vifa4g02033 329 FunFam Ethylene-responsive transcription factor 2 43 101 - -
Vifa4g02033 329 SUPERFAMILY DNA-binding domain 43 99 IPR016177 GO:0003677
Vifa4g02033 329 CDD AP2 43 99 IPR001471 GO:0003700|GO:0006355
Vifa4g02033 329 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 27 212 - -
Vifa4g02033 329 MobiDBLite consensus disorder prediction 1 44 - -
Vifa4g02033 329 Gene3D AP2/ERF domain 42 101 IPR036955 GO:0003700|GO:0006355
Vifa4g02033 329 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Vifa4g02033 329 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Vifa4g02033 329 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02033 Vifa-Chr4 593234150 593235139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02033 1 225 AP2-EREBP Transcription Factor Family AT1G24590 37.705 5.09e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g02033 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02033 - - psat:127136947 446.047