Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01996 ATGGTGAAGCTTCCATTCTTCGATTCGACTCAATCTTCTTCATCTTCTGCGCGATCTTTGTATCATCCGAATATCAAGAATTTCAACCGCCGGTCACTGCAATTTGAGTGTTCATTCAGTATATTAAATCCATCCTCTTTGTCGAGAAAGGGTCTTGATGTTCATACTGTCCATCTCCATAGGCTACTGATGCGCTTTCAACATTTAGAGTCTTTATCCTTATGTGGTTGTACGGAGCTCAATGATTCAGGATTAACCCGTCTGCTAAGCTATGGTTCGAATTTACAGAAACTTAATCTAGATTGTTGTTTGAAAGTTACTGATTACGGGCTATCCCTGGTTGCTTCTGGTTGTCCCTCATTGACGTCAATTAGTCTCTATCGGTGTATCAACATTTCTGATGACGGATTAGAGACTTTAGCCACTGCTTGTTTATCTTTGAAATGCATAAACCTCTCGTACTGCTCACAAATATCCGACAAAGGGTTGAAAGCTCTTACTCAGAGGTGTCGTCAGCTTCAGGCAGTTAACATATCACACTGTGAGAGTATAAGAGGTGTTGGCTTCAAAGGGTGTTCAAAATCTCTCACACATGTAGAGGCTTGGTCTTGTAAGCTCAACCCAGAAGGGGTGACGGGAATAATTAGTGGCGGTGGTATAGAGTATCTAGACGTATCTTGTTTAAGTTGGTATCCCTTAGGAGATACCTTGCTTGGAATAAGATTGTCCTCAAACCTCAAAGTCCTTAACTTTCGAATGTGCAGATCTGTTTCCGATACTTCTATTGTTGCAATAGCCATGGGATGTACACTACTTGAAGAATGGAACTTAGCATTATGTCATGAGGTGAGGATATCTGGATGGCAAGCAGTGGGGTTATATTGTCAGAATTTGAAGAGACTGCATGTTAATCGATGCCGTAATCTCAATGATAATGGCCTGCAGGCATTACGAGACGGTTGCAGAAGTCTCTCGGTTTTGTACTTGAATGGTTGTGTTCACGTGACTCCTTTTGCATTAGAGTTATTCAAGTCTCACAGAGCAAATGTTTGTATAAAGGATGAAGAGGTTACCTGTGGAGGTTGTCAGAGTGCTCACACAGCTGCTATTGCTGTTATGTGTGCTGAGAGAGGAATTACGTCACATCTGCTTCTACGAGGAGAGCAGCCTGAAATCTTGACTGGCTATAACTTGATGTCTACAATATATGGAAATGTCACATATGTTCCGAGAACTATGTACGCCAACAGGGAAGAAATGCTAAAGAACTATGCTAGGTCAGTGGCCGGAAACAGTGGTGCTTTCCTATGGTTCAATGATATCATTCAAGCTTCTTCAACAGGCGAATTGTCTACTTCTCAAAATTTTACGAAAATGGACGCAAGTAGAAGTGAGAGAAACCATCTTCAAAAGATTTTAGTTGTCAACGAAGGGGCTGGTGATTCTGTTGCTCTACTAGGTATTATTCGGTTAGTGCAATACTTATCACAAAATCATTTACTTGGGAAACAAAGAGCCACAAAATTTGTCGTTGATGCTGGTACTGGCACAACAGCTATTGGTATAGGACTTGCAGCCATTTTCTTTGGACTTCCGTGGGAGGTACACGCGGTTATGCTGGCAGATAAAATTGATGGGTACCGAAAGCAGGAAAAGCACTTGATTGTTGAATTCAGTAAGCATTTCAATGTTGAGTTTCTTGACCACGACGTAAACAAAGAAGATGCTGGGATTGTGCATTGGGTGGAACGTGACCGTCCAAGAAAGTTACAGATTCAATTTTGCGCTGCTTACATTTTCATCGGGGTTGTTTGCATTCTTCTTTATTTTGGAGGTCAAAAGCAAAGAGTTGCAATTGGAAGAGCAATTTTGAAAGATCCAAAAATATTACTTCTTGATGAAGCTACAAGTGCCCTTGATGCCGAGTGTGCATGTATTGATACTAACTTGTGCATTTGTATGTTCTTTTTAAACCTTGGTGATTTCCTTGTGCAGAAACTAGGGGAAGGTGATGTTGTTGCTGGAGACGTCGTTGAACTCAACCCACAACGCGATACTGTTGATGGAATGACTGCTATGGTAGCTGCTAAGTTGGTCAGAGAAATGGCTGCAAAGATTGCAAAATGA 2127 0.4137 MVKLPFFDSTQSSSSSARSLYHPNIKNFNRRSLQFECSFSILNPSSLSRKGLDVHTVHLHRLLMRFQHLESLSLCGCTELNDSGLTRLLSYGSNLQKLNLDCCLKVTDYGLSLVASGCPSLTSISLYRCINISDDGLETLATACLSLKCINLSYCSQISDKGLKALTQRCRQLQAVNISHCESIRGVGFKGCSKSLTHVEAWSCKLNPEGVTGIISGGGIEYLDVSCLSWYPLGDTLLGIRLSSNLKVLNFRMCRSVSDTSIVAIAMGCTLLEEWNLALCHEVRISGWQAVGLYCQNLKRLHVNRCRNLNDNGLQALRDGCRSLSVLYLNGCVHVTPFALELFKSHRANVCIKDEEVTCGGCQSAHTAAIAVMCAERGITSHLLLRGEQPEILTGYNLMSTIYGNVTYVPRTMYANREEMLKNYARSVAGNSGAFLWFNDIIQASSTGELSTSQNFTKMDASRSERNHLQKILVVNEGAGDSVALLGIIRLVQYLSQNHLLGKQRATKFVVDAGTGTTAIGIGLAAIFFGLPWEVHAVMLADKIDGYRKQEKHLIVEFSKHFNVEFLDHDVNKEDAGIVHWVERDRPRKLQIQFCAAYIFIGVVCILLYFGGQKQRVAIGRAILKDPKILLLDEATSALDAECACIDTNLCICMFFLNLGDFLVQKLGEGDVVAGDVVELNPQRDTVDGMTAMVAAKLVREMAAKIAK 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01996 708 Gene3D Ureohydrolase domain 660 707 - -
Vifa4g01996 708 SUPERFAMILY RNI-like 41 341 - -
Vifa4g01996 708 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED 357 588 IPR027278 -
Vifa4g01996 708 Gene3D - 348 438 IPR036052 -
Vifa4g01996 708 Gene3D Ribonuclease Inhibitor 233 347 IPR032675 -
Vifa4g01996 708 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 353 560 IPR036052 -
Vifa4g01996 708 Gene3D - 611 643 IPR027417 -
Vifa4g01996 708 SUPERFAMILY Arginase/deacetylase 665 705 IPR023696 -
Vifa4g01996 708 Pfam ABC transporter 611 637 IPR003439 GO:0005524
Vifa4g01996 708 Gene3D - 448 590 IPR036052 -
Vifa4g01996 708 Pfam Leucine Rich repeat 144 166 IPR001611 GO:0005515
Vifa4g01996 708 Pfam Leucine Rich repeat 294 317 IPR001611 GO:0005515
Vifa4g01996 708 Pfam Arginase family 663 702 IPR006035 GO:0046872
Vifa4g01996 708 SMART LRR_CC_2 295 320 IPR006553 -
Vifa4g01996 708 SMART LRR_CC_2 92 117 IPR006553 -
Vifa4g01996 708 SMART LRR_CC_2 243 268 IPR006553 -
Vifa4g01996 708 SMART LRR_CC_2 66 91 IPR006553 -
Vifa4g01996 708 SMART LRR_CC_2 144 169 IPR006553 -
Vifa4g01996 708 SMART LRR_CC_2 321 346 IPR006553 -
Vifa4g01996 708 SMART LRR_CC_2 118 143 IPR006553 -
Vifa4g01996 708 SMART LRR_CC_2 170 195 IPR006553 -
Vifa4g01996 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 643 IPR027417 -
Vifa4g01996 708 Gene3D Ribonuclease Inhibitor 8 229 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01996 Vifa-Chr4 582736831 582741371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01996 611 643 Calmodulin-binding Proteins AT2G36910 78.788 7.08e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01996 K10268 - gmx:102667402 531.561