Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01992 ATGAACCCAGAACTCCCAATACCTCCATCAACCAACCCAACCCAACCACAAAAATTCTCTCTTCAAGTAGACTCAGAAAACAAATCCACAGAATTCAAAATCCACTCAATAGCCAAACCTCACATGCTAGCATTCCATCTCTCATGGTTCTCATTCTTTGCATGTTTCGTTTCAAGCTTTGCAGCAGCACCACTTGTTCCTATAATCCGTGACAACCTTAACCTCACAGCAACAGACATAGGAAATGCCGGTGTCGCTTCCGTTTCCGGTGCCGTTTTCGCAAGAATCGCAATGGGAACAGCTTGTGACTTAGTCGGCCCTCGTCTTGCTTCCGCTTCTCTCATTCTCTTAACTTCACCAGCTGTTTACTTCACCTCCATCATTGATTCTCCTACAAGTTTCCTTCTAGTCCGTTTCTTCACCGGCTTTTCTCTAGCCACGTTTGTTTCTACTCAGTTTTGGATGAGTTCCATGTTTTCCACCACCGTTGTTGGTAGAGCAAACGGTTTCTCAGGTGGTTGGGGTAACCTGGGTGGAGGCGCAACACAACTCATCATGCCACTCGTGTTTTCTCTCATTCAAAACATTGGTTCAACAAAATTCACTGCATGGAGAATAGCTTTTTTCATACCTGCTTTTTTACAAACCCTGACAGCGTTTTCGATATTAATATTCGGACAAGATTTACCCGACGGAAACTTTCACGGCTTGAAAAAATCAGGTGAGAAAGCAAAAGATGAATTCTCAAAAGTACTTTACCATGGTGTATTGAATTATAGAGGTTGGGTTTTAGCTTTGACTTATGGATATTGTTTTGGAGTGGAGTTGACTGTGGACAATATCATAGCTGAATATTTTTATGATAAATTTAACCTTAATCTTGGAACAGCTGGGATAATTGCTGCGAGTTTTGGTTTGGCTAATGTTTTTTCTAGGCCTGGAGGAGGGCTTATTTCTGATTTGATGGCAAAGAGATTTGGAATGAGGGGGAGGTTATGGTGTTTGTGGATTTGTCAAACGTTGGCTGGTGTTTTTTGTGTGCTTTTGGGACTTGTTGGATCTTTGAATCTTTCTGTTCTTGTTATGATTATTTTCTCTGTTTTTGTTCAAGCTGCTTGTGGAATGACGTTTGGGATTGTTCCTTTTGTCTCAAGAAGGTCATTAGGAGTAATATCAGGAATGACAGGAGGAGGAGGAAACGTAGGTGCAGTTATAACCCAACTAGTATTCTTTAAAGGATCAAGGTTTTCAAAAGAAAGAGGAATAACACTAATGGGTGCAATGATCATAGTATGCACTCTACCATTATTCTTAATCTATTTTCCACAATGGGGTGGCATGTTATTTGGTCCATCTTCATCTAAAAATGTCTCTGAAGAAGATTATTATTTATCTGAATGGAACTCAAAGGAAAGAGAAAAAGGCTCTCATCATGGAAGCTTGAAATTTGCTGATAATAGTAGAAGTGAAAGAGGTAGAAAATTTAATATTTCAACTAGGCCTTCTGAAGATGTCACGCCACCACAACAACATGTTTGA 1539 0.4009 MNPELPIPPSTNPTQPQKFSLQVDSENKSTEFKIHSIAKPHMLAFHLSWFSFFACFVSSFAAAPLVPIIRDNLNLTATDIGNAGVASVSGAVFARIAMGTACDLVGPRLASASLILLTSPAVYFTSIIDSPTSFLLVRFFTGFSLATFVSTQFWMSSMFSTTVVGRANGFSGGWGNLGGGATQLIMPLVFSLIQNIGSTKFTAWRIAFFIPAFLQTLTAFSILIFGQDLPDGNFHGLKKSGEKAKDEFSKVLYHGVLNYRGWVLALTYGYCFGVELTVDNIIAEYFYDKFNLNLGTAGIIAASFGLANVFSRPGGGLISDLMAKRFGMRGRLWCLWICQTLAGVFCVLLGLVGSLNLSVLVMIIFSVFVQAACGMTFGIVPFVSRRSLGVISGMTGGGGNVGAVITQLVFFKGSRFSKERGITLMGAMIIVCTLPLFLIYFPQWGGMLFGPSSSKNVSEEDYYLSEWNSKEREKGSHHGSLKFADNSRSERGRKFNISTRPSEDVTPPQQHV 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01992 512 Gene3D MFS general substrate transporter like domains 243 445 IPR036259 -
Vifa4g01992 512 MobiDBLite consensus disorder prediction 470 498 - -
Vifa4g01992 512 SUPERFAMILY MFS general substrate transporter 33 440 IPR036259 -
Vifa4g01992 512 FunFam High affinity nitrate transporter 2.5 37 233 - -
Vifa4g01992 512 Pfam Major Facilitator Superfamily 49 405 IPR011701 GO:0022857|GO:0055085
Vifa4g01992 512 CDD MFS_NRT2_like 45 438 IPR044772 GO:0015112
Vifa4g01992 512 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 11 494 IPR044772 GO:0015112
Vifa4g01992 512 MobiDBLite consensus disorder prediction 470 512 - -
Vifa4g01992 512 Gene3D MFS general substrate transporter like domains 36 233 IPR036259 -
Vifa4g01992 512 ProSiteProfiles Major facilitator superfamily (MFS) profile. 44 444 IPR020846 GO:0022857
Vifa4g01992 512 FunFam Nitrate transporter 2.1 245 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01992 Vifa-Chr4 581734344 581736677 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01992 16 493 Inorganic Solute Cotransporters AT1G12940 71.967 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01992 K02575 - gmx:100787888 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01992 4 581734344 581736677 Vifa4g01992 4 581734344 581736677 ECH