Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01991 ATGTCTTCTTCACCATATCTTACTCTCCTCTTCATTTACTATTTCACATATCCAACACTTTCTTCTGATCCCGGAGCAACAAAAGTTCTCTTACTATGCACAAACAAAACCGCAACCTCAATGCCATTCCGCAAACTTTTTATATCAAACTTCCTCTCAGCAATGGACTCCTTAACTCCCTTAATAGCAAAACAACAATACGCCGCCGTCTCAAACGGAGCACGAAACGCCACCGTTTTCGCCTACGGCGAGTGCATAAAAGACCTCTCTCAATCAGATTGTAACATATGCATCGCACAGTGCAAAACACAGATCCTAAGCTGTTTGCCTTTTCAGAAAGGTACACGTGGAGGAAGGTTGTTGTTTGATGGTTGTTACATACGGTACGATGAATACAGTTTCTTTAACGAGAGTCTTGGTAATCAAGACACGACCGTGTGTGGAAATAATGAAACTAAAACAAGTAGTAATGTTTATGAAGCGAATGTTTATGAATTGCTGAGGAATTTGAGTGTGTTGGCGCCGAAAAACGGTGGATTTTCTGTTGGGTTTGTTGAGAGGAAGAATGTAACGGTGTATGGTTTGGCTCAGTGTTGGAAGTTTGTTACTGGTGGTAACTGTCGGAGATGTTTGGAGGATGCGGTTACTAGGATTGGTTCTTCGTGTAGGAAGAAAGAAGATGGACGGGTTTTGAATTCTGGTTGTTATTTGAGGCATTCACCACACAAGTTCTATAACAATTCAAGTAGTAATGATGTTGCTGCTGGAAATCGCGGACACCGAAAAATGGCTATAATTTTGGCTGCATCTTCTGCTGTCTTGGCTCTTCTTTTAGTTACTGCAACAATGGGTTTCTTTATAAGAAAGAATGTAATGAGGAAAAGAAGAGAGAGAAAACAATTTGGGACACTTTTGGATACAGTGAATAAATCCAAGCTAAATGTTCCATATGAAATTCTTGAAAAAGCAACAAATTACTTCAATGATGACAATAAACTAGGACAAGGAGGATCAGGTTCAGTTTATAAAGGAGTTATGCCAGATGGTAATACTGTGGCTGTTAAAAGGCTTAGTTTTAACTCGACGCAATGGGTGGATCATTTCTTCAATGAGGTTAATTTGATTAGTGGAGTTCATCACAAAAATCTTGTCAAGCTTTTGGGATGCAGCATTACAGGACCTGAAAGCCTTCTTGTTTATGAATATGTGCCTAACCAGAGCCTCTATGATTACCTATCTGTTAGAAGCATTTGTCAACCTCTTAGTTGGGAAGTGAGGCATAAGATCATATTGGGAATTGCAGAAGGCCTGGCCTACCTTCATGAGGAATCACATGTGAGAATCATTCATAGAGATATAAAATTAAGCAACATTCTCCTTGAGGACGACTTCACACCCAAGATTGCTGATTTTGGACTAGCTAGATTGTTTCCAGAAGACAATTCTCACATTAGCACGGTTGTCGCTGGGACACTGGGTTATATGGCTCCCGAGTACGTGATTCGCGGGAAATTGACTGAGAAAGCAGATGTTTATAGCTTTGGAGTTCTAGTTGTTGAAATTGTGTCTGGCAAAAAAAACAGTTCCTATGTTCTGAATTCATCTTCTATCCTACAAACGGTTTGGAACCTTTATGGATCAAATAAGCTCTCTGACATAGTTGATCCAATCCTAGAAGGTAATTTTCCTGAAGAGGAAGCATGCCAAATGCTTCGGATAGGATTGCTTTGTGCACAAGCAACTGCAGAGTTGAGACCATCAATGTCAGTAGTTGTTAAAATGATTAATAACAATCATGAAATTTCTCAGCCAACGCAACCGCCCTTTATTTATTCTAGTAGCTCTGAACTCAGCAAATCTGCTTCACAAAGACGATGTAATTTTCTTCCACAATCCAACACTCAATCTTCAGGCGATACAATGACCGAAAGCTTGGTTGACCCTAGCATGGAATTGTCCTTACTGAAATCTCCGAATTGA 1980 0.3995 MSSSPYLTLLFIYYFTYPTLSSDPGATKVLLLCTNKTATSMPFRKLFISNFLSAMDSLTPLIAKQQYAAVSNGARNATVFAYGECIKDLSQSDCNICIAQCKTQILSCLPFQKGTRGGRLLFDGCYIRYDEYSFFNESLGNQDTTVCGNNETKTSSNVYEANVYELLRNLSVLAPKNGGFSVGFVERKNVTVYGLAQCWKFVTGGNCRRCLEDAVTRIGSSCRKKEDGRVLNSGCYLRHSPHKFYNNSSSNDVAAGNRGHRKMAIILAASSAVLALLLVTATMGFFIRKNVMRKRRERKQFGTLLDTVNKSKLNVPYEILEKATNYFNDDNKLGQGGSGSVYKGVMPDGNTVAVKRLSFNSTQWVDHFFNEVNLISGVHHKNLVKLLGCSITGPESLLVYEYVPNQSLYDYLSVRSICQPLSWEVRHKIILGIAEGLAYLHEESHVRIIHRDIKLSNILLEDDFTPKIADFGLARLFPEDNSHISTVVAGTLGYMAPEYVIRGKLTEKADVYSFGVLVVEIVSGKKNSSYVLNSSSILQTVWNLYGSNKLSDIVDPILEGNFPEEEACQMLRIGLLCAQATAELRPSMSVVVKMINNNHEISQPTQPPFIYSSSSELSKSASQRRCNFLPQSNTQSSGDTMTESLVDPSMELSLLKSPN 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01991 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Vifa4g01991 659 Gene3D Phosphorylase Kinase; domain 1 287 402 - -
Vifa4g01991 659 FunFam Cysteine-rich receptor-like protein kinase 3 143 244 - -
Vifa4g01991 659 SUPERFAMILY Protein kinase-like (PK-like) 313 624 IPR011009 -
Vifa4g01991 659 Gene3D - 27 134 IPR038408 -
Vifa4g01991 659 Gene3D - 142 244 IPR038408 -
Vifa4g01991 659 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 81 628 - -
Vifa4g01991 659 SMART serkin_6 327 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01991 659 CDD STKc_IRAK 333 597 - -
Vifa4g01991 659 ProSiteProfiles Gnk2-homologous domain profile. 141 244 IPR002902 -
Vifa4g01991 659 ProSiteProfiles Protein kinase domain profile. 327 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01991 659 Pfam Salt stress response/antifungal 33 132 IPR002902 -
Vifa4g01991 659 Pfam Salt stress response/antifungal 147 240 IPR002902 -
Vifa4g01991 659 FunFam Cysteine-rich receptor-like protein kinase 2 403 603 - -
Vifa4g01991 659 MobiDBLite consensus disorder prediction 629 659 - -
Vifa4g01991 659 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Vifa4g01991 659 Gene3D Transferase(Phosphotransferase) domain 1 403 608 - -
Vifa4g01991 659 ProSiteProfiles Gnk2-homologous domain profile. 27 134 IPR002902 -
Vifa4g01991 659 Pfam Protein kinase domain 328 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01991 659 MobiDBLite consensus disorder prediction 629 647 - -
Vifa4g01991 659 FunFam Cysteine-rich receptor-like protein kinase 2 293 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01991 Vifa-Chr4 581660532 581663816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01991 18 492 Receptor kinase-like Gene Family AT1G70530 61.345 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g01991 Pkinase 6.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01991 - - gmx:100305402 934.865