Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01981 ATGGCAGAAGAAACCTTTGGAGATGATTCACAACAAAGACATCTAGACCGCTTAAAAGATCAAGTTCGTTTGGTTAAAAGGAAAAACTGTGAACGCTATGAGGTTGCTCCAATCAAAGACAAACTATCGTTTGAGAATGGGTTTTATATGGTACTCCATGCATGCCAGATGTTGGTCCAGAAAAATGATGGAATGATATTAGTAGGGGTGGGAGGTCCTTCGGGGGCTGGAAAGACTGTTTTGGCTGATAAGATATTCAACTCCATGCCTGACATTGCTGTTATTTCAATGGACAATTACAATGATTCTAGTCGAATTGTCGATGGAAACTTTGATGATCCACGTTTAACAGACTATGAAACGTTGCTCCGAAATGTATGTGATTTAAAGGCAGGAAAGCCAGTTGAAGTTCCTGTGTATGATTTCAAATCCAGTTCACGTACGGGATACAGGACAGTCAAAGTCCCGAGCTCTCGTATTGTGATTATAGAGGGCATTTATGCTTTGAGTGAGAGGTTAAGGCCTCTACTGGACCTTCGAGTATCTGTAACAGGAGGCATTCATCTTGACCTGATCAAACGAGTTATACGTGATATACAACGTGCTGGTCAAGAACCTCAAGAAATCATTCATCAAATATCTGAGACGGTATTTCCAATGTACAAGGCTTATATTGAGCCAGATCTCCAAACAGCACATATAAAAATAACCAACAAGTTTAATCCATTTTTTGGATTCCAAAGCCCTACATACATACTAAAGTCAACCAGGAATGTAACGGTGGATCAAATTAAAGCTGTTCTCTCTCAAGATTTGGAGGAAACAACTGAGCAGACTTATGACATATATCTTCTACCACCCGGTGAAGATCCAGAGAGCTGTCAATCATATTTACGGATGCGAAATAAAGATGGGAATTACAGTCTCATGTTTGAGGAATGGGTGACCGATGATCCATTTGTCATATCACCAAGAATTACTTTTGCAGTCAGTGTGCGTCTTCTTGGTGGACTTATGGCCCTTGGATATACAATAGCAACTATCCTTAAAAGAAGCAGCCATATCTTATCTGATGATGGGGTTTGTGTTAAACTAGATTGGCTTGAGCAACTAAATCGACATTATGTTCAGGTACAGGGAACAGATCGATTAGTTGTATCATACATAGCACAACAAATTGGTTTGGAAGGTTCATACATTCCCCGTACTTATATTGAGCAGATTCAACTTGAAAAGCTTGTAATGGCCATGCCAGATGGTTTAATAAGGAGAAAGCTCAACCTTACTGAGGATTTGGTGTCAAGCCCCAAAGCAGCACATTTTAGAACCTCTAGTGATGGGGCTTCCATGAGACATAAGCGTTTCAGAAGTGATATGCCACAGTCATTCACAAGTCAAGAGGATGAGAATCAAGCCAAAGTAACTGGATTCGTGCTGAACAATCAAGGACTTCATGAAAAAAATAGTTCGGATTCCGAAACGAAACTGGAAAACCAGGGTGCCATCAGTCAACTTTCAGAACAAATTGCATGCCTGCATGATAGAATGGGCGAATTTGCATATCGTATTGAAGAGCTGAACTCGAAGTTAACCTCAAAGGAAAATTGTCCAAACCAACAAAATATGGTCCTACAATCTGAGTCATGTGATGGCTCTGCTCCTACCTCTTACTTCATCACTTGTTTGAGTAATGGTTCCCTAACTGGATCTATAATGCCAAATTCCTCATTCCCATCACAATTTGCTAAGGACACACCTTTAAGAGATGAGATATCAGGTATCGCACAGGTTCAACGCCAGATAATGAATCAGTTGGACAACTTGAATAATATTTTCTGTAGGAATTTGGAAGAGAAGCCTCATCATACAAGAACCAACTGGAAAAGTTCTTCTTCTTCTTCAGAGTCCGGTGGACGACATATAATAGCAGCAGTGGCTATTGGTTGTTTGAGCATCTTCGTAATGAAGGGTTTGTTATCCTGA 1983 0.4024 MAEETFGDDSQQRHLDRLKDQVRLVKRKNCERYEVAPIKDKLSFENGFYMVLHACQMLVQKNDGMILVGVGGPSGAGKTVLADKIFNSMPDIAVISMDNYNDSSRIVDGNFDDPRLTDYETLLRNVCDLKAGKPVEVPVYDFKSSSRTGYRTVKVPSSRIVIIEGIYALSERLRPLLDLRVSVTGGIHLDLIKRVIRDIQRAGQEPQEIIHQISETVFPMYKAYIEPDLQTAHIKITNKFNPFFGFQSPTYILKSTRNVTVDQIKAVLSQDLEETTEQTYDIYLLPPGEDPESCQSYLRMRNKDGNYSLMFEEWVTDDPFVISPRITFAVSVRLLGGLMALGYTIATILKRSSHILSDDGVCVKLDWLEQLNRHYVQVQGTDRLVVSYIAQQIGLEGSYIPRTYIEQIQLEKLVMAMPDGLIRRKLNLTEDLVSSPKAAHFRTSSDGASMRHKRFRSDMPQSFTSQEDENQAKVTGFVLNNQGLHEKNSSDSETKLENQGAISQLSEQIACLHDRMGEFAYRIEELNSKLTSKENCPNQQNMVLQSESCDGSAPTSYFITCLSNGSLTGSIMPNSSFPSQFAKDTPLRDEISGIAQVQRQIMNQLDNLNNIFCRNLEEKPHHTRTNWKSSSSSSESGGRHIIAAVAIGCLSIFVMKGLLS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01981 660 Pfam CYTH domain 269 404 IPR023577 -
Vifa4g01981 660 Gene3D - 65 273 IPR027417 -
Vifa4g01981 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 238 IPR027417 -
Vifa4g01981 660 CDD UMPK_like 67 239 - -
Vifa4g01981 660 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Vifa4g01981 660 PRINTS Uridine kinase signature 188 198 - -
Vifa4g01981 660 PRINTS Uridine kinase signature 224 237 - -
Vifa4g01981 660 PRINTS Uridine kinase signature 65 82 - -
Vifa4g01981 660 PRINTS Uridine kinase signature 132 147 - -
Vifa4g01981 660 PANTHER URIDINE KINASE 35 413 - -
Vifa4g01981 660 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Vifa4g01981 660 SUPERFAMILY CYTH-like phosphatases 263 407 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01981 Vifa-Chr4 577082904 577086390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01981 66 236 PRT Gene Family AT5G40870 28.333 3.97e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01981 K00876 - gmx:100781286 946.421