Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01973 ATGGGGGGTGGCAAAAACCGGAAGCTACATTTAAGCAAGATCTATTCATTCACATGTTTCAAAGCGAGTTCGGGTGATGACGGAGATCATTCACAAATTGGAAGTAGAGGCTATTCGAGGGTGGTGTTATGCAATGAACAGAACAGTACTAATGATGAGGAAGCTGTGATTAAGAATTTTGCAGATAATTCTGTCAGATCTACAAAATATACCGTTGCTACTTTTCTTCCAAAATCACTTTTTGAACAGTTTAGGAGAGTGGCTAATTTCTATTTTTTGGTTACTGGTGTTTTGGCTTTCTCTAAACTTGCTCCTTATAAAGTTGGTACTGCTATTTTTCCTCTTGCTGTTGTTATTGGGGCAACTATTGTGAAAGAAGGTATTGAAGATTGGCGTAGGAAAAAGCAGGATATCGAGGTGAACAATAGAAGAGTTAAAGTTCATAAAGTTGATGGAATTTTTGAATATACTGCATGGAAGAATCTGAGGGTAGGGAATATAGTGAAGGTAGAGAAAGATGAGTTTTTCCCAGCAGATATTGTATTGCTTTCATCGAGTTATGAGGATGCAGTCTGCTACGTGGAGACGATGAACTTGGATGGCGAGACAAATTTGAAGTTAAAACAAGGGAGTATGGAGTTTGGAGTGCAAAAATATGCCCTTTCTCCTCAGCAACTTCTTTTGCGAGGCTCTAAGCTTCGTAATACAGAATATATTTTTGGAGCTATCATTTTCACCGGTCATGACACTAAGGTTATTCAGAATTCTACTGATCCACCTTCGAAGAGAAGCCGCGTTGAGAAGAAAATGGATAAAGTCATCTACTTCTTGTTTTGTATTTTGTTTCTAATGGCATCCGTAGGATCTATTTTCTTTGGCTTTATAACTAAAGACGACTTGCAAAAAGGGGTGGTGAAAAGATGGTATTTAAGGCCTGATAATTCTACAAAATTCTTTGATCCGGAAAGACCGGCTGCGGCTGCTGCATGTCATTGTTTGACAGCCTTAATGTTATACGGCTTCTTTATTCCAATCTCATTGTATGTGTCAATAGAAATTGTCAAAGTCCTTCAGAGTATTTTCATCAATCAAGACATCCATATGTACTACAAAGAAGCAGACAAACCGGCACATGCTCGCACTTCAAACCTGAACGAGGAGCTTGGTCAAGTTGACACGATACTTTCCGATAAAACTGGAACTTTGACCTGCAACTCCATGGAATTCATCAAATGTTCGATCGCTGGTGTAGCTTATGGTCGTGGTGTTACAGAGGTTGAGAAGACAATGAGTAGAAGAAAAGGTTCAACGTTAGTTCGTGAGCGTGATGTATCGGACAATGGCATCAGTGATTCTCTTGATAATAAAGAAGTCATAAATGGTTTTAACTTTACTGATGAAAGAATAATGAATGGACATTGGGTAAATGAGCCTCGCGCAGATATCATCCAGAAGTTTTTTCGCCTTTTAGCAGTCTGTCATACAGCCTTACCAGAAGTAGATAAAGAAACCGGAAATGTGTTGTACGAGGCTGAATCTCCGGATGAAGCTGCATTTGTTATTGCGGCAAGAGAACTTGGTTTTGAATTCTACAAAAGGGCTCAGACTAGTTTATCGACATACGAGTTGGATCCAGTTTCTGGCAAGAAAATTGAAAGGGTGTACAAGATTCTCAATGTGTTAGAATTCAATAGCTCAAGGAAGAGAATGTCGGTAATAGTAAAAGACGATGAAGGAAAAATTCTACTACTCTGCAAAGGCGCCGACAGTGTCATGTTTGAAAGACTTGCCAAGAATGGGAGGGAGTTTGAAGAGGAAACCATGGAACATGTGCACGAATATGCTGATGCAGGTCTCCGAACCCTTATACTTGCCTATCGTGAACTTGAAGCAGAAGAATACATGGAGTTTCATAATAAATTCTCGGAGGCCAAGAATTTGGTTAGTGCAGATCGGGAAACATTGATTGAAGAAGTTTCGGATAATATGGAGAAGAACCTAATCCTTCTTGGTGCTACTGCTGTAGAGGACAAGCTCCAAAATGGGGTTCCTGATTGTATTGACAAGCTTGCCCAAGCAGGAATTAAGATTTGGGTTTTGACTGGGGATAAAATGGAGACCGCAATCAATATTGGGTTTGCTTGTAGTTTGCTTAGACAAGGAATGAAACAGATTATAATTCATTTGGATAGTCCAGAAATTCAAGCATTGGAGAAAGATGGTGACAAGAGAGCTATTACCAAAGCATCAAGGCAGAGTGTCCTATTTCAAATACGTGAAGGTGCTGCGCAGCTTACTGCACACAAAGGGAACTCTCAGCAGGCATTTGCTCTAGTAATTGATGGTAAATCACTTGCTTATGCACTTGAGGATGATATGAAGAACATGTTCCTGGAACTTGCCATTCGTTGTGCGTCTGTTATTTGCTGTCGGTCATCGCCAAAGCAGAAGGCACTGGTCACTAGATTAGTCAAATCTGGAACTGGTAAAACAACGTTAGCTATTGGCGATGGAGCTAATGATGTTGGAATGCTTCAAGAAGCTGATATCGGGGTTGGTATAAGTGGCGTCGAAGGAATGCAGGCTGTTATGTCTAGTGACATTGCAATTGCACAATTCCGATATTTGGAACGATTACTCCTGGTGCATGGGCATTGGTGTTACCGAAGGATCTCAACGATGATATGCTATTTTTTCTACAAGAACATCACATTTGGTTTCACTCTATTCTTGTATGAGGTGTATGCATCATTCTCAGGAGAACCTGCATACAACGACTGGTTTTTAGCTCTCTATAATGTCTTTTTTTCATCACTTCCCGTGATTGCTCTCGGTGTATTTGACCAAGACGTATCTGCTCGGTACTGCCTCAAGTTTCCTTTGTTATATCAAGAAGGAGTACAAAATGTCCTTTTCAGCTGGCGTCGAGTGCTCAGCTGGATGCTTAACGGATTCTTTAGCGCTTTATTAATTTTCTTCTTCTGCACAAAGGCAATGGAGGTACAAGCCTTCGATTCAGAGGGAAGAACTGCCGGAAGAGATATACTAGGAACAACCATGTGCTCTTGTGTAGTTTGGGTTGTAAACTTGCAAATGGCAGTAGCTATAAGTTACTTCACCTTGATCCAACATTTTTTCATCTGGGGTTCCATATTTTTCTGGTACATTTTTCTCCTAATATATGGAGCATTGCCTCAAAAGTTTTCGGAAAATGCTTACAAAGTCTTTGTTGAAACTCTTGCTCCTTCGCCTTCCTATTGGATATTAACATTCTTTGTGGTGATCACAACCCTAATGCCATACTTCTCATACAAAGCAATTCAAATGCGGTTCTTTCCGATGCATCACGAAATAGTACAGTGGATAAGATATGATGGGAAGACTGAGGATCCCGAGTACTGTGATATGGTGCAGACAAGATTGTTGCAGCAAACGTCTTTTGATTCAACAGCTCGCTTAGTGGCCAAGGCTAACCAATAA 3480 0.4037 MGGGKNRKLHLSKIYSFTCFKASSGDDGDHSQIGSRGYSRVVLCNEQNSTNDEEAVIKNFADNSVRSTKYTVATFLPKSLFEQFRRVANFYFLVTGVLAFSKLAPYKVGTAIFPLAVVIGATIVKEGIEDWRRKKQDIEVNNRRVKVHKVDGIFEYTAWKNLRVGNIVKVEKDEFFPADIVLLSSSYEDAVCYVETMNLDGETNLKLKQGSMEFGVQKYALSPQQLLLRGSKLRNTEYIFGAIIFTGHDTKVIQNSTDPPSKRSRVEKKMDKVIYFLFCILFLMASVGSIFFGFITKDDLQKGVVKRWYLRPDNSTKFFDPERPAAAAACHCLTALMLYGFFIPISLYVSIEIVKVLQSIFINQDIHMYYKEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVEKTMSRRKGSTLVRERDVSDNGISDSLDNKEVINGFNFTDERIMNGHWVNEPRADIIQKFFRLLAVCHTALPEVDKETGNVLYEAESPDEAAFVIAARELGFEFYKRAQTSLSTYELDPVSGKKIERVYKILNVLEFNSSRKRMSVIVKDDEGKILLLCKGADSVMFERLAKNGREFEEETMEHVHEYADAGLRTLILAYRELEAEEYMEFHNKFSEAKNLVSADRETLIEEVSDNMEKNLILLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIIHLDSPEIQALEKDGDKRAITKASRQSVLFQIREGAAQLTAHKGNSQQAFALVIDGKSLAYALEDDMKNMFLELAIRCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISTMICYFFYKNITFGFTLFLYEVYASFSGEPAYNDWFLALYNVFFSSLPVIALGVFDQDVSARYCLKFPLLYQEGVQNVLFSWRRVLSWMLNGFFSALLIFFFCTKAMEVQAFDSEGRTAGRDILGTTMCSCVVWVVNLQMAVAISYFTLIQHFFIWGSIFFWYIFLLIYGALPQKFSENAYKVFVETLAPSPSYWILTFFVVITTLMPYFSYKAIQMRFFPMHHEIVQWIRYDGKTEDPEYCDMVQTRLLQQTSFDSTARLVAKANQ 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01973 1159 FunFam Phospholipid-transporting ATPase 122 257 - -
Vifa4g01973 1159 SUPERFAMILY Calcium ATPase, transmembrane domain M 50 1113 IPR023298 -
Vifa4g01973 1159 SFLD Haloacid Dehalogenase 377 886 - -
Vifa4g01973 1159 SUPERFAMILY HAD-like 390 890 IPR036412 -
Vifa4g01973 1159 Pfam E1-E2 ATPase 143 298 - -
Vifa4g01973 1159 Gene3D - 671 875 IPR023214 -
Vifa4g01973 1159 FunFam Phospholipid-transporting ATPase 670 875 - -
Vifa4g01973 1159 SFLD p-type atpase 377 886 IPR044492 -
Vifa4g01973 1159 FunFam Phospholipid-transporting ATPase 512 670 - -
Vifa4g01973 1159 ProSitePatterns E1-E2 ATPases phosphorylation site. 397 403 IPR018303 -
Vifa4g01973 1159 NCBIfam phospholipid-translocating P-type ATPase 211 1120 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vifa4g01973 1159 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 402 671 IPR023299 GO:0000166
Vifa4g01973 1159 Gene3D - 122 257 - -
Vifa4g01973 1159 CDD P-type_ATPase_APLT_Dnf-like 62 995 - -
Vifa4g01973 1159 Pfam Phospholipid-translocating ATPase N-terminal 51 107 IPR032631 -
Vifa4g01973 1159 PRINTS P-type cation-transporting ATPase superfamily signature 835 854 - -
Vifa4g01973 1159 PRINTS P-type cation-transporting ATPase superfamily signature 395 409 - -
Vifa4g01973 1159 Pfam Cation transport ATPase (P-type) 502 596 - -
Vifa4g01973 1159 NCBIfam HAD-IC family P-type ATPase 806 917 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g01973 1159 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 47 210 - -
Vifa4g01973 1159 Pfam Phospholipid-translocating P-type ATPase C-terminal 863 1113 IPR032630 -
Vifa4g01973 1159 SUPERFAMILY Calcium ATPase, transduction domain A 146 254 IPR008250 -
Vifa4g01973 1159 Gene3D - 525 670 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01973 Vifa-Chr4 575390354 575396358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01973 1 1156 Primary Pumps ATPases AT1G68710 70.213 0.0 1771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01973 K01530 - gmx:100781421 1920.21