Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01966 ATGGCTTCTGCTGTTCCCGTCCAAACCATCGACGCCGATGAACTTCTGTTATGCTCGATTCTCCACCGAACCGACTTCACTTTGCAGACAAACGCCAATCCTAACGTATGGGCGGAGGAAATCACCTCCATGCTTCATTCCTCCGCCGTCACTCTCCCCTCCGTCGAGCTTGCTCGCTGTCTAGTTTCTCATTTCTTTTGGAACTGTCACGGTCCTACCGCTTGGAAGATTCTTGATGTTGCTTCCTCCCGCAATATCATCCCTCCCTTGCTCCTCCTTGCTCTTCTCTCCACCAGGATTGTTTATTGTAGGAGACTTCAACCGATAGCTTACAAACTTTACTTGGAACTCGTTAAGCTACATGCGTTTACGCTGGAAACTCATTTCAATTCTCCTAACAACCAAATGATTATGGAATCAATTGATGATGTTCTTAAGCTTTCTCAAATATACGGTCAAAAGGATTGTGAACCAGGAGTTGTTCTTGTGGAATTTGTCTTCTCAATTTTATCGCAGTTGCTTGAAGCATCTTTAGATGATGAAAGGTTATTATATAATATTCTAGAGATTAAGCCAAGATGGCTAAGCAATTCACATGATATGGATATTGATGTGCCTGACTGCAAAAATAGAATGCATCGTGAGCAGAAGGAGTGGTTGCTGAGGGAAAATACAAAGTTGGCTATTGAGATCATTGTAGAATTTTTGCAGAATAAAATGACATCAAGGCTTCTTTCCTTAGTTCATCGAAACATGCCATTACACTGGGGATCTTTCAATTACCAAATGCAGTTGCTTGCATCAAACTCTTCACTTTTGAGGAATTTGAAACATAATGCAAACACCCTTTTATCTTTAATGGAAAATATCCGTGTGGGTATATCTCATGAACGCAATACAAAATCTAAGCTGGAGTCTAATGTAGTAGTCACACCTACTGGTTCTCAAATATCTTTTGCTGGTCAATCTTATGGTAGTAGCTGGTCTTCACTCTGGCTTCCTATTGACCTTATACTTGAAGATGCTTTGGATGGAGGGCAAGTAGCAGCTTTTAGTGCTATTGAAATTATTACTGGTTTGGTAAAGCATTTACATTCAGTAAATGGCTCTAAGTGGAAAAATACATTTTTGGGTTTATGGACTGCAGCACTACGGTTGGTTCAAAGGGAAAGGGATTCAAAAGCAGGCCCTATACCTCGTCTTGATACCTGCATGTGTTTGCTGTTGAGCATTACAACCCATGTGGTTGCAAATATTGTTGAAGAAGAAGAAAGTGAGTTGATTGAAGAAGCTGAACGCGGCCCTTCAAATCAAGGAAAAAGTAAACAGGTTCTGGGGAAGCGTCGTGGGGAATTGATTACTAGTTTGCTTTTATTGGATAATTCTCAGTGTTTGCTTATTCCACCTCAAACTGCTCTCATGGAAGCCAATCAAGCTGCTGCCAAGGCTACTAAGTTTGTATCACGAAACCCTGTGGGTAGTGGGTACGTAGAATCATTGACCATGGATGACTTGGTTACGAACTGCTCTGGAAACTTACTGCATCTAATTGTTGAGGCATGTATTGCAAGAAATATACTCGACACATCAGCATATTTTTGGCCTGGCTATGTGAAGCCCCGCAGCAATCAAATTTCTTTCAGCATTTCTAACCATGTGGATGGCTGGTCTGCGTTGATGAAGGGATCACAGTTAACTCCTGGATTAGTTGATGTCTTAGTTGCAACTCCTGCTTCCAGCTTAGCGGAGATTGAAAAGATATATGAAATTGCAATCAATGGTTCAGACGAAGAGAAGATATCTGCTGCTACCATTCTGTGTGGGGCGTCTCTAGTACGTGGATGGAATATACAGGAACACAATATTATTTTTATCACAATGTTGCTCACACATGTTGGTCTGCCTAATCACACTGAGACCGAAAGCCATTTGATCAACCTGCTCTCACATGGAGTTGCAGCTGATCCCGACACGGATGAAGTGTATGTAAAACTAAGGCTCTTTCCTCTGCATCCTAGCGATGTTAATTTTGATGGTGACACTGTTGCTGGCGTCAATGATAATCTGATGCAATCCTATACAAAGACCTTGACACAATCTGATGCAAATAATGGTGGTTTCGCTTGTCCTAAGAATTGTACAGAAATAATTCTTCCTCCATTAGACTGTTCAGATAGGCTTCCTTCTCAGGACAACTGGACTAGGGGGATTCACTTGTGTTTGTGA 2226 0.416 MASAVPVQTIDADELLLCSILHRTDFTLQTNANPNVWAEEITSMLHSSAVTLPSVELARCLVSHFFWNCHGPTAWKILDVASSRNIIPPLLLLALLSTRIVYCRRLQPIAYKLYLELVKLHAFTLETHFNSPNNQMIMESIDDVLKLSQIYGQKDCEPGVVLVEFVFSILSQLLEASLDDERLLYNILEIKPRWLSNSHDMDIDVPDCKNRMHREQKEWLLRENTKLAIEIIVEFLQNKMTSRLLSLVHRNMPLHWGSFNYQMQLLASNSSLLRNLKHNANTLLSLMENIRVGISHERNTKSKLESNVVVTPTGSQISFAGQSYGSSWSSLWLPIDLILEDALDGGQVAAFSAIEIITGLVKHLHSVNGSKWKNTFLGLWTAALRLVQRERDSKAGPIPRLDTCMCLLLSITTHVVANIVEEEESELIEEAERGPSNQGKSKQVLGKRRGELITSLLLLDNSQCLLIPPQTALMEANQAAAKATKFVSRNPVGSGYVESLTMDDLVTNCSGNLLHLIVEACIARNILDTSAYFWPGYVKPRSNQISFSISNHVDGWSALMKGSQLTPGLVDVLVATPASSLAEIEKIYEIAINGSDEEKISAATILCGASLVRGWNIQEHNIIFITMLLTHVGLPNHTETESHLINLLSHGVAADPDTDEVYVKLRLFPLHPSDVNFDGDTVAGVNDNLMQSYTKTLTQSDANNGGFACPKNCTEIILPPLDCSDRLPSQDNWTRGIHLCL 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01966 741 PANTHER OS07G0681500 PROTEIN 19 647 IPR039638 GO:0016592|GO:2000762
Vifa4g01966 741 ProSitePatterns Caspase family histidine active site. 637 651 IPR016129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01966 Vifa-Chr4 572558439 572560892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01966 644 738 B3 DNA Binding Superfamily AT2G28350 41.509 5.43e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01966 - - jre:109011046 677.552