Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01964 ATGGCAGAGCATGTTGCTGGAGCATTTGTTTCGTCTTTCTTTGAAATGGTTTTTGATAGCTTCGATGAAGAAGTTGAAAAGAAAAAGGATGTGTTGGAGTTGAAAAATGAAGGTTCTGCTCATAATGAAGTTAGAGCCGGTTCAAAACCTTTAGAAAGATGGCCAACTTCATTTTTTTTGGATGCATCGGAAATATATGGTAGAGACGGTGATAAATATAAAATGATCAAAATTTTACTTTCAAATGATGGCAGTGGCAACAAGACACCTGTAACCAGCATAGTGGGTATGGGCGGAATAGGTAAGACCACCTTTGCTAAGCTTGTGTACAATGATAGTAAGATTGAGGATCATTTTGAACTTAGAGCATGGGTTTATGTTTCAGAATCTTTTGATGTTGTTGAACTCACCAAAGCAATTTTCAAATCATTTAATTCTTCAGCAGATGATGAATCTATTTTCAATTTACTCCAACAGAGACTGCATCACATACTAACAGGCAAGAAATACTTGCTTGTTTTAGACGATATCTGGAACGGGAATGTGAAATTTTGGGAACAATTACTACTTCCCTTTAACCATGGATCTTCTGGAAGTAAGATTATTGTGACAACGCGTGACAAAGAGGTAACAAATGTCCTGAAATCCACCAGATTATTTGATTTACGGCAATTGGGCAAAAGTGATTGTTGGAGTTTGTTTGTGACACATGCATTTCACGGCAAGAGTGCGTCTGAATATCCAAATCTTGAATCAATTGGAAAGAAAGTAGTGGACAAGTGTGGAGGGTTGCCTTTGGCTATAAAAACATTGCGAAAAAAATTCTCTGAACTTGAATGGATGAAGATACTGGAGACTGATATGTGGCGTTTATCAGATGAAGACATCAACATTAACCCAGTGTTGAGATTGAGTTACCATAATCTCCCTTCCAATCAAAAGCGTTGTTTTGCTTATTGTTCTATATTTCCCAAAGGTTATTGGTTTGGCAAAGATGAATTAATCATGTTTTGGACGGCAGAAGGTTTGCTGAAGTGTAACAGAACAGACAAAAGTGAAGAAGAGTTAGGTAATGAAATTTTTGGTGATCTTGAATCAATTTCATTTTTCCAACCATCATCTCATCCTAAACGTGTTGGGTTGTTGGAAGCCATCCTTGAAAGGAGAAGAAGGTTTAAGAGATATCAACACAAATTAGTCATGCACAATCTTGTCAATGATTTAGCAAAATCAGTGTCAGGAGAATTTTCTATGCAAATAGAAGGTGCTAGGGTGGAAGGAATCCATGAAAGGATATGTCACATTTGTTGCTCTTCTCAATTAATTTGCGTTGATGAATTAATAAAGCCAATTTGTGAGCATAAGGGACTACATAGTCTGATTCTAGAAGGCAAAGATGCCAAAGCATATGGGAAATTTAAACAATCTTCAGGCCTTGCCTTATTTAATGTGGAAGAGCAGAATGGATCTGATCTTAAGGAGTTGGCTAAACTAAACAATCTTTATGGAAAAATTCATATTAAAGGGTTGGGTAATGTCATTGATCCTGCAGGTGCTGCAACAGCAATTTTGAAAAACAAGAAGTATTTAGAAGAAACACGGATGACATTCGATGGCAAAAGAGAAGCAATGGATGGCTCAATAGTTGAAAGAAATGCGTCAGTCTTGGAGACTCTTCAACCAAATAGAAACTTGAAAAGGCTCACCATTGAGTACTACAAAGGCATTATGTTTTCAAATTGGCTAAATGGCAGCAATTTACCCAACTTAATATCTCTTAAATTGCAGAGCTGTGGATTATGTTCCCATTTTCCACCACTTGGGCAGCTCCCCTTTCTCAAAGAGCTTTCTATTAGCTGCTGCTATGGAATAAAAATAATTGGTGAAGAGTTTTATGACAATAATTCAACAAATGTTTCGTTCAAGTCTCTTGAAGTTTTGGAATTTTCAGAAATGCTTGAATGGGAGGAATGGTCTTGCCTCGAAGGATTTCCTTTGCTTAAAAATCTTTCTATAAGAAGATGTCCCAAATTGAAAAATGCTCTGCCTCAACATCTTCCTTCTTTACAAAAATTGGAGATTTTTAATTGCCAAGAGTTGGAGGTGTCAATTTCCAAGAGTTAG 2124 0.3668 MAEHVAGAFVSSFFEMVFDSFDEEVEKKKDVLELKNEGSAHNEVRAGSKPLERWPTSFFLDASEIYGRDGDKYKMIKILLSNDGSGNKTPVTSIVGMGGIGKTTFAKLVYNDSKIEDHFELRAWVYVSESFDVVELTKAIFKSFNSSADDESIFNLLQQRLHHILTGKKYLLVLDDIWNGNVKFWEQLLLPFNHGSSGSKIIVTTRDKEVTNVLKSTRLFDLRQLGKSDCWSLFVTHAFHGKSASEYPNLESIGKKVVDKCGGLPLAIKTLRKKFSELEWMKILETDMWRLSDEDININPVLRLSYHNLPSNQKRCFAYCSIFPKGYWFGKDELIMFWTAEGLLKCNRTDKSEEELGNEIFGDLESISFFQPSSHPKRVGLLEAILERRRRFKRYQHKLVMHNLVNDLAKSVSGEFSMQIEGARVEGIHERICHICCSSQLICVDELIKPICEHKGLHSLILEGKDAKAYGKFKQSSGLALFNVEEQNGSDLKELAKLNNLYGKIHIKGLGNVIDPAGAATAILKNKKYLEETRMTFDGKREAMDGSIVERNASVLETLQPNRNLKRLTIEYYKGIMFSNWLNGSNLPNLISLKLQSCGLCSHFPPLGQLPFLKELSISCCYGIKIIGEEFYDNNSTNVSFKSLEVLEFSEMLEWEEWSCLEGFPLLKNLSIRRCPKLKNALPQHLPSLQKLEIFNCQELEVSISKS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01964 707 Gene3D - 58 219 IPR027417 -
Vifa4g01964 707 FunFam Probable disease resistance protein At1g61300 56 217 - -
Vifa4g01964 707 Gene3D Ribonuclease Inhibitor 438 707 IPR032675 -
Vifa4g01964 707 SUPERFAMILY L domain-like 401 698 - -
Vifa4g01964 707 PRINTS Disease resistance protein signature 91 106 - -
Vifa4g01964 707 PRINTS Disease resistance protein signature 684 700 - -
Vifa4g01964 707 PRINTS Disease resistance protein signature 164 178 - -
Vifa4g01964 707 PRINTS Disease resistance protein signature 261 275 - -
Vifa4g01964 707 PANTHER DISEASE RESISTANCE PROTEIN RP 452 675 IPR044974 GO:0006952
Vifa4g01964 707 Pfam NB-ARC domain 74 285 IPR002182 GO:0043531
Vifa4g01964 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 320 IPR027417 -
Vifa4g01964 707 Gene3D - 224 305 IPR042197 -
Vifa4g01964 707 Gene3D - 306 411 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01964 Vifa-Chr4 572264073 572266829 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01964 87 326 WRKY Transcription Factor Family AT5G45050 26.667 2.69e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01964 - - tpra:123913225 584.719