Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01938 ATGGAGAAAACTGCAAATTCCTCTGCTAACAGTAAAGAATCTGTGAACAAATGGATGGCATTTGCTAACAAAAATGATGAAAATTCAGCAGCAATAAAGGCTCCGTCTGGCAATGATGATGATGATCAAATTCTAACCGAAGCGGCCATAGCGGAGAGAACGGCGGAATGGGGACTTGTCGTGAACACAAGCAATTTCAAAGCGGGAATTGAGACATCAAGTTCTTCAATTGATGGTGACAAGAGCAGAAGCATGTCGGATAGGTTTGCTGAATCGACGAGGACTTCGGGGGATTCGAATTATGCTTCGGAGGCTAGATTGTCAGGGTCGATTCCAAGAGTTTCACAAGACTTGAAAGAAGCATTGGCTACACTCCAACAAACATTTGTTGTGTCAGATGCAACTAAACCTGATTGTCCTATCTTGTATGCAAGCAGTGGTTTTTTTACTATGACTGGTTACTCATCAAAAGAGGTTATTGGAAGGAATTGCCGATTTCTTCAAGGACCGGAAACTGACATGAATGAAGTCGCAAAAATTCGGGATGCAACTAAGAATGGGAGAAGTTATTGCGGCAGGCTTTTAAACTACAAGAAAAATGGAACACCATTTTGGAATCTTCTAACTGTCACACCAATCAAAGATGATCATGGCAATACTATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGTACACGGAAGGTGTGAATGAGAAGGAACTAAGACCAAATGGATTACCAAAATCATTAATTCGCTACGACGCTCGTCAAAAGGAGAAAGCTATGGGTTCAATCACTGAGGTTATTCAAACCGTTAAGGATCCTAAATCGACTATTCGTGGTAAGAATGAGGACACTTCCACCACATTGCATGAAGAGCAAGAGAATCTCAATCATGAATTTGCTTTGCCAAAGTCTGTTGAATCTGTGAATGCTGGTACACCACTTGGTAGACAAACTCCATTGAAACTCCATGGTGATAGTAATAATATTTCGCGCTATAGTTCTTACGAGGAAAGGAACAAGTCGTCAAGAAAATCAGGAGTTCCTTTGAAAGGTAACAAAGGGAAATCAATGAGTTCTCTTGGAAGAGATAAGGAGAAGGCTATTATTGAACCTGAAGTTTTGATGACAAAGGAAATAGAATGGTCCAATTGGGAACTAGGAGAGAGGGATATAAGGCAAGGAATTGATTTAGCAACCACATTGGAAAGGATAGAAAAGAATTTTGTGATTTCTGATCCTAGACTTCCAGATTGTCCTATAATATTTGCATCAGATAGCTTTCTTGAGCTTACAGAATACACGCGAGAAGAAATTTTGGGTCGAAACTGCCGGTTTTTACAAGGACCAGAAACTGACCAGGCAACTGTCTCTAGGATTAGAGATGCTATCAGAGATCAGAGGGAAATCACAGTTCAGTTGATCAATTATACTAAGAGTGGAAAGAAATTCTGGAATTTGTTTCACTTGCAGCCTATGCGCGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATTTAGAGCCTTTAAGAAACCGTCTCTCGGAGGGTTCTGAGCTACAAAGTGCTAAATTGGTGAAAGCCACTGCAGAAAATGTTGATGAAGCTGTTAGAGAACTTCCTGATGCCAATTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAAGCAGTTTTGCCAAGACCACACAAAAGGAACAATCCTTCTTGGGTAGCTATTCAAAAGATAACGGCAAGAGGCGAGAAAATTGGCCTTCATCATTTTTCTCCGATAAGGCCTTTGGGTTGTGGAGATACCGGCAGTGTCCATTTAGTGGAACTTCGAGGTACCGGCGAACTATATGCAATGAAGGCAATGGAAAAGTCAGTAATGCTGAATCGTAATAAGGTTCATCGAGCGTGCATTGAAAGAGAGATTATATCCTTACTAGATCATCCTTTTCTTCCAGCACTATACACCTCATTTCAGACAGACACGCATGTATGTTTGATTACTGACTTCTGCCCTGGGGGTGAGTTGTTCGCGTTACTCGACAGGCAACCCATGAAGATTCTAAAAGAAGATTCAGCAAGATTCTATGCAGCAGAGGTTGTTATCGGTTTGGAATATCTTCATTGTTTGGGTATAATTTATCGTGACTTAAAGCCCGAAAATCTCTTACTTCAGAAGGATGGCCATGTTGTATTAACTGATTTCGATCTATCATTTATTACATCTTGTAAACCACAGGTTATGAAGCAGTCATTACCTGGTAATAGAAGCGGTAGAAGATCTCGAAGTCAACCATCACCAATATTTTTTGCAGAACCAATTACACAATCAAACTCATTTGTTGGAACTGAAGAATATATTTCCCCGGAAATCATAACTGGAGCGAGGCATACAAGTGCTATAGATTGGTGGACACTTGGTATCTTGTTGTACGAGATGCTATACGGTCGTACACCATTTCGAGGAAAGAATAGACAGAAGACATTCTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTAGCAGCCAGGCAGATTATTAATGCACTATTGCAAAGAGACCCGGGCAGTCGTCTAGGTTCAACTACAGGAACTAATGAAATCAAACAACATCCTTTTTTCCGTGGAATAAATTGGCCTTTAATCCGCAACATGAGTCCACCCCCTTTAGATGTTCCTCCTCAGTTGATAGGAAAAGATCCGACGGTAAAGGACAAGAAATGGGAAGATGATGGCGTACTAATTAGTTCCATTGATATGGATATTTTTTGA 2808 0.4074 MEKTANSSANSKESVNKWMAFANKNDENSAAIKAPSGNDDDDQILTEAAIAERTAEWGLVVNTSNFKAGIETSSSSIDGDKSRSMSDRFAESTRTSGDSNYASEARLSGSIPRVSQDLKEALATLQQTFVVSDATKPDCPILYASSGFFTMTGYSSKEVIGRNCRFLQGPETDMNEVAKIRDATKNGRSYCGRLLNYKKNGTPFWNLLTVTPIKDDHGNTIKFIGMQVEVSKYTEGVNEKELRPNGLPKSLIRYDARQKEKAMGSITEVIQTVKDPKSTIRGKNEDTSTTLHEEQENLNHEFALPKSVESVNAGTPLGRQTPLKLHGDSNNISRYSSYEERNKSSRKSGVPLKGNKGKSMSSLGRDKEKAIIEPEVLMTKEIEWSNWELGERDIRQGIDLATTLERIEKNFVISDPRLPDCPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHLEPLRNRLSEGSELQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQAVLPRPHKRNNPSWVAIQKITARGEKIGLHHFSPIRPLGCGDTGSVHLVELRGTGELYAMKAMEKSVMLNRNKVHRACIEREIISLLDHPFLPALYTSFQTDTHVCLITDFCPGGELFALLDRQPMKILKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENLLLQKDGHVVLTDFDLSFITSCKPQVMKQSLPGNRSGRRSRSQPSPIFFAEPITQSNSFVGTEEYISPEIITGARHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQIINALLQRDPGSRLGSTTGTNEIKQHPFFRGINWPLIRNMSPPPLDVPPQLIGKDPTVKDKKWEDDGVLISSIDMDIF 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01938 935 SMART pac_2 191 233 IPR001610 -
Vifa4g01938 935 SMART pac_2 473 515 IPR001610 -
Vifa4g01938 935 ProSiteProfiles PAS repeat profile. 114 187 IPR000014 -
Vifa4g01938 935 SUPERFAMILY PYP-like sensor domain (PAS domain) 415 511 IPR035965 -
Vifa4g01938 935 ProSitePatterns Protein kinases ATP-binding region signature. 603 626 IPR017441 GO:0005524
Vifa4g01938 935 FunFam LOV domain-containing protein 386 549 - -
Vifa4g01938 935 Gene3D PAS domain 388 549 - -
Vifa4g01938 935 MobiDBLite consensus disorder prediction 304 365 - -
Vifa4g01938 935 ProSiteProfiles PAC domain profile. 470 524 IPR000700 -
Vifa4g01938 935 Pfam PAS domain 135 231 IPR000014 -
Vifa4g01938 935 Pfam PAS domain 419 511 IPR000014 -
Vifa4g01938 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 718 730 IPR008271 GO:0004672|GO:0006468
Vifa4g01938 935 CDD PAS 141 230 IPR000014 -
Vifa4g01938 935 PANTHER FLIPPASE KINASE 1-RELATED 84 902 - -
Vifa4g01938 935 FunFam Putative LOV domain-containing protein 128 284 - -
Vifa4g01938 935 MobiDBLite consensus disorder prediction 71 104 - -
Vifa4g01938 935 Pfam Protein kinase domain 600 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01938 935 Gene3D Transferase(Phosphotransferase) domain 1 681 900 - -
Vifa4g01938 935 ProSiteProfiles PAS repeat profile. 396 469 IPR000014 -
Vifa4g01938 935 Gene3D PAS domain 128 300 - -
Vifa4g01938 935 Gene3D Phosphorylase Kinase; domain 1 596 680 - -
Vifa4g01938 935 SUPERFAMILY PYP-like sensor domain (PAS domain) 135 227 IPR035965 -
Vifa4g01938 935 CDD STKc_phototropin_like 595 909 - -
Vifa4g01938 935 NCBIfam PAS domain S-box protein 140 231 IPR000014 -
Vifa4g01938 935 NCBIfam PAS domain S-box protein 423 511 IPR000014 -
Vifa4g01938 935 CDD PAS 423 511 IPR000014 -
Vifa4g01938 935 ProSiteProfiles Protein kinase domain profile. 597 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01938 935 MobiDBLite consensus disorder prediction 324 338 - -
Vifa4g01938 935 SMART pas_2 398 467 IPR000014 -
Vifa4g01938 935 SMART pas_2 116 185 IPR000014 -
Vifa4g01938 935 SMART serkin_6 597 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01938 935 SUPERFAMILY Protein kinase-like (PK-like) 575 913 IPR011009 -
Vifa4g01938 935 MobiDBLite consensus disorder prediction 89 104 - -
Vifa4g01938 935 FunFam Putative LOV domain-containing protein 681 898 - -
Vifa4g01938 935 FunFam LOV domain-containing protein 596 680 - -
Vifa4g01938 935 ProSiteProfiles PAC domain profile. 188 242 IPR000700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01938 Vifa-Chr4 562597510 562603211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01938 9 934 AGC Kinase Gene Family AT5G58140 69.504 0.0 1283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa4g01938 Pkinase 8.8e-59 CL0016