Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01936 ATGGCCACGCTATTCAGAAAACTACGCGAATCTGCAGCATCGTTGAAACGATCCACCACCACCACAACAGCCACCTCCAATTTATCAGAGCGACACGCTCCTTTAGGTTTATTCGACTCACTCCCTTCTGACTTACTCCTCAAAATCATACGACTGTTAGACCCTAAACACGCCGCTAAACTCTGCATCGTTTGCAAATCATGGCGATCTCTTGTCTCCGATAACCAACTCTGGAACCATTTCCTTCAGAATCACCAACCTCTACACTACGATTCCATTATCTTCTCTGAAACTAAATTAACCTCTGGTTATCCTCTTCCATTCTTTGTTACTCACACGCCACGCGTCTTGTCGTTTAAGCATGTTTATGGCCAACGGGAACGCCTTCCTCCTGCTGTTATCATCGACGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAAGAGGAGCGTCCATTGGGGCGAACTCCTACCTTTTTGGAATTCGGTAACGTGGAGACACCTATATATACTAGGCTTCGACATTTTTTTGGGACCGTCTATGGCAGGATGAAGGTGAAACCCAGTTCTCAAGCAGTTGTTGTTTCTTTACCATTATGCCACTATGATGATACTGAATCAGCTAGAGCATCAAGACAGCAGCTTAAAGAAGCAATCTGTGCTGCTCTATTTGACTTGAATGTTCCCGCTGTTTGTGCTCTCAACCAGGCAACTTTAGCTCTGTATGCTGCAAAACAAACTTCTGGAATATCTGTTAATATAGGCTTTCAAGTCACATCTGTAGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTAAAACTTACAGGATTTCTTAGAGAGAAAATGCAACAAAACAGCTTAAATTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGAAGCTATGCTATGTGGCCTATGACTATGAAGCTGAGCTATTGAAAGATACACAAGCATCATTTGAAGCTGTTGAAGGGAGGTATTCACTCTCGAAAGAGAGGTTTCAAACAGGAGAGATCTTATTCCAGCCACGTCTTGCTGGGGTTCGAGCAATGAGTTTGCACCAAGCCACAGCTCTCTGTATCGACCATTGCTATTCTGCAGAGTTAGCAGGCGGCAGTGATTGGTTTAAGACCATTGTCTTATCAGGAGGTTCTGCATGTTTACCAGGTTTAGCAGAAAGGTTAGAGAAGGAACTGCATTTGTTACTTCCTCATATGTCAAATGGAATCAGAGTCATCCCTCCTCCACATGGTGCGGATACTGCATGGTTTGGTGCAAAGCTTATTGGCAGTTTGAGCACATTTCCTGCCCCTTGGTGTACAACAAAGAAGCAGTTCCGTCAGAAGTCTAAACTCAACCGAATATGGTGA 1407 0.4407 MATLFRKLRESAASLKRSTTTTTATSNLSERHAPLGLFDSLPSDLLLKIIRLLDPKHAAKLCIVCKSWRSLVSDNQLWNHFLQNHQPLHYDSIIFSETKLTSGYPLPFFVTHTPRVLSFKHVYGQRERLPPAVIIDGGSGYCKFGWSKEERPLGRTPTFLEFGNVETPIYTRLRHFFGTVYGRMKVKPSSQAVVVSLPLCHYDDTESARASRQQLKEAICAALFDLNVPAVCALNQATLALYAAKQTSGISVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNSLNFESLYTVRTLKEKLCYVAYDYEAELLKDTQASFEAVEGRYSLSKERFQTGEILFQPRLAGVRAMSLHQATALCIDHCYSAELAGGSDWFKTIVLSGGSACLPGLAERLEKELHLLLPHMSNGIRVIPPPHGADTAWFGAKLIGSLSTFPAPWCTTKKQFRQKSKLNRIW 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01936 468 SMART fbox_2 41 81 IPR001810 GO:0005515
Vifa4g01936 468 CDD NBD_sugar-kinase_HSP70_actin 133 277 - -
Vifa4g01936 468 PANTHER ACTIN 175 460 IPR004000 -
Vifa4g01936 468 Gene3D - 23 128 - -
Vifa4g01936 468 SUPERFAMILY Actin-like ATPase domain 247 455 IPR043129 -
Vifa4g01936 468 Gene3D - 133 460 - -
Vifa4g01936 468 Gene3D - 237 433 - -
Vifa4g01936 468 ProSiteProfiles F-box domain profile. 35 81 IPR001810 GO:0005515
Vifa4g01936 468 SUPERFAMILY Actin-like ATPase domain 131 250 IPR043129 -
Vifa4g01936 468 Gene3D Actin; Chain A, domain 4 280 362 - -
Vifa4g01936 468 Pfam F-box-like 39 81 IPR001810 GO:0005515
Vifa4g01936 468 SUPERFAMILY F-box domain 30 94 IPR036047 GO:0005515
Vifa4g01936 468 SMART actin_3 130 468 IPR004000 -
Vifa4g01936 468 Pfam Actin 207 454 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01936 Vifa-Chr4 562513377 562524046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01936 179 453 Cytoskeleton Gene Families AT5G09810 33.798 5.09e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01936 K16616 - gmx:100804254 721.85