Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01932 ATGAGGATTGCAGATGCTACTGGATTTATATCCTCATGTTTCCCTTGCATGGAATTTCCTGCTGTCAAAGAGGACCATGTTTGCATTGTAACTGGCTATTGTGAAGGGGGTGACATGACCGAGTGCATTAAGAAAGCTCACAGATCGTTTTTTCTAGAGGAGTGGCTAACTCAACTGTTGATAGCGGTAGACTACTTGCATTCTAACCGTGTAATCCACCGAGATCTTAAGTATTCCAACATATTCCTCACCAACGACAACAATATTCGGCTAGGTTTTATGTATTGTGATGCTTGA 297 0.4175 MRIADATGFISSCFPCMEFPAVKEDHVCIVTGYCEGGDMTECIKKAHRSFFLEEWLTQLLIAVDYLHSNRVIHRDLKYSNIFLTNDNNIRLGFMYCDA 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01932 98 Pfam Protein kinase domain 23 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01932 98 ProSitePatterns Serine/Threonine protein kinases active-site signature. 71 83 IPR008271 GO:0004672|GO:0006468
Vifa4g01932 98 Gene3D Transferase(Phosphotransferase) domain 1 8 97 - -
Vifa4g01932 98 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 25 92 - -
Vifa4g01932 98 ProSiteProfiles Protein kinase domain profile. 1 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01932 98 SUPERFAMILY Protein kinase-like (PK-like) 14 91 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01932 Vifa-Chr4 561533366 561534888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01932 28 91 AGC Kinase Gene Family AT2G34650 39.706 6.78e-10 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vifa4g01932 Pkinase 5.7e-16 CL0016