Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01931 ATGAGTAGCAGTGACGTAGATAAAACCTTAAAAGAAAAGGAGCCTAAGACGCCTCCAGTGGTTACTTCTCAGGAGCAGTCTTCAACGGCAACTGGCACTCCAGCAGTTAATCCTGAATGGGCTAACTATCAGGCATACTCTCCTATACCTCCACCTGGATACATGGCATCAAGTCCCCAAGCCCACCCATATATGTGGGGTGTTCAGCATATTATGCCTCCCTATGGCACCCCACCTCATCCTTATGTTGCAATGTATCCCCACGGTGGCTTATATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTATGCCATGCCTTCTCCAAATGGTATGGTGGATGCTTCAGGAAATACTCCAGGCAGCAGTGAAGCTGATGGTAAACCTCATGAGGCGAAGGAAAAATTACCAATCAAAAGATCAAAAGGAAGTATTGGTAGTTTGAATATGGTTACAGGAAAAAATAATGAACTCAGTAAAACACCAGGAGCATCTGCCAATGGAATTCATTCCAAAAGTGGTGAGAGTGCAAGCGAAGGTTCTAGTGAAGGAAGTGATGAAAACTCCCACAATGTTTTGCAGGATTCTCAATTGAAATCCGGGGAGAGGCAGGATTCTTTTGAAGATGAGCCGTCTCAAAATGGAAGTTCAGCGCAGGCTCCTCAAAATGGGGGACTTAATACACCTCACACAGTCGTTAACCAGACTATGTCTGTCGTGCCTATGTCTGTTGCTGGTCCTATCGCAGCAGTTGCTGGTCCCACTACTAATTTAAATATAGGAATGGATTACTGGGGAACACCAGCTTCATCCACCATTCCTGCAATGCATGGAAAGGTACCTTCTACTGCAGTTGCTGGAGGGATGGTTAATGCTGGGCCTAGAGATGGTGTTCATTCACAACCTTGGCTACAGGATGAAAGGGAGCTTAAAAGACAAAGGCGAAAGCAGTCTAATAGGGAATCTGCACGGAGATCCAGGTTGCGAAAGCAGGCTGAATGTGATGAATTAGCTCAGCGTGCTGATGTTTTGAGTGAAGAAAATGCCTCTCTCCGTGCTGAACTAAGCAGGATCAAGAGTGAGCACGCTAAGGCACTTGCTGAGAATGCAGCCCTCAAGGTGAAACAGGGAGAGATACTGAGGAACGAGGAAATTGTGCCGGGCCAGAATGATCAGCTTGTGGAGCATGGTGTTCATTAG 1209 0.4648 MSSSDVDKTLKEKEPKTPPVVTSQEQSSTATGTPAVNPEWANYQAYSPIPPPGYMASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGGLYAHPSMPPGSYPFSPYAMPSPNGMVDASGNTPGSSEADGKPHEAKEKLPIKRSKGSIGSLNMVTGKNNELSKTPGASANGIHSKSGESASEGSSEGSDENSHNVLQDSQLKSGERQDSFEDEPSQNGSSAQAPQNGGLNTPHTVVNQTMSVVPMSVAGPIAAVAGPTTNLNIGMDYWGTPASSTIPAMHGKVPSTAVAGGMVNAGPRDGVHSQPWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLSEENASLRAELSRIKSEHAKALAENAALKVKQGEILRNEEIVPGQNDQLVEHGVH 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01931 402 Gene3D - 313 368 - -
Vifa4g01931 402 MobiDBLite consensus disorder prediction 1 15 - -
Vifa4g01931 402 Pfam Disordered region downstream of MFMR 137 277 - -
Vifa4g01931 402 SUPERFAMILY Leucine zipper domain 313 366 IPR046347 GO:0003700|GO:0006355
Vifa4g01931 402 MobiDBLite consensus disorder prediction 129 143 - -
Vifa4g01931 402 MobiDBLite consensus disorder prediction 213 234 - -
Vifa4g01931 402 MobiDBLite consensus disorder prediction 287 334 - -
Vifa4g01931 402 PANTHER G-BOX-BINDING FACTOR 3-RELATED 15 378 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vifa4g01931 402 MobiDBLite consensus disorder prediction 148 203 - -
Vifa4g01931 402 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 312 364 IPR004827 GO:0003700|GO:0006355
Vifa4g01931 402 MobiDBLite consensus disorder prediction 19 38 - -
Vifa4g01931 402 Coils Coil 330 371 - -
Vifa4g01931 402 MobiDBLite consensus disorder prediction 1 38 - -
Vifa4g01931 402 Pfam G-box binding protein MFMR 1 98 IPR012900 -
Vifa4g01931 402 Pfam bZIP transcription factor 310 372 IPR004827 GO:0003700|GO:0006355
Vifa4g01931 402 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 317 332 IPR004827 GO:0003700|GO:0006355
Vifa4g01931 402 MobiDBLite consensus disorder prediction 113 234 - -
Vifa4g01931 402 SMART brlzneu 310 374 IPR004827 GO:0003700|GO:0006355
Vifa4g01931 402 MobiDBLite consensus disorder prediction 304 319 - -
Vifa4g01931 402 CDD bZIP_plant_GBF1 315 366 IPR045314 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01931 Vifa-Chr4 561524155 561529491 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01931 1 376 bZIP Transcription Factor Family AT2G35530 64.660 6.97e-164 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa4g01931 MFMR_assoc 7.3e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01931 K09060 - gmx:778122 581.637