Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01930 ATGAGTAGCAGTGACGTAGATAAAACCTTAAAAGAAAAGGAGCCTAAGACGCCTCCAGTGGTTACTTCTCAGGAGCAGTCTTCAACGGCAACTGGCACTCCAGCAGTTAATCCTGAATGGGCTAACTATCAGGCATACTCTCCTATACCTCCACCTGGATACATGGCATCAAGTCCCCAAGCCCACCCATATATGTGGGGTGTTCAGCATATTATGCCTCCCTATGGCACCCCACCTCATCCTTATGTTGCAATGTATCCCCACGGTGGCTTATATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTATGCCATGCCTTCTCCAAATGGTATGGTGGATGCTTCAGGAAATACTCCAGGCAGCAGTGAAGCTGATGGTAAACCTCATGAGGCGAAGGAAAAATTACCAATCAAAAGATCAAAAGGAAGTATTGGTAGTTTGAATATGGTTACAGGAAAAAATAATGAACTCAGTAAAACACCAGGAGCATCTGCCAATGGAATTCATTCCAAAAGTGGTGAGAGTGCAAGCGAAGGTTCTAGTGAAGGAAGTGATGAAAACTCCCACAATGATTCTCAATTGAAATCCGGGGAGAGGCAGGATTCTTTTGAAGATGAGCCGTCTCAAAATGGAAGTTCAGCGCAGGCTCCTCAAAATGGGGGACTTAATACACCTCACACAGTCGTTAACCAGACTATGTCTGTCGTGCCTATGTCTGTTGCTGGTCCTATCGCAGCAGTTGCTGGTCCCACTACTAATTTAAATATAGGAATGGATTACTGGGGAACACCAGCTTCATCCACCATTCCTGCAATGCATGGAAAGGTACCTTCTACTGCAGTTGCTGGAGGGATGGTTAATGCTGGGCCTAGAGATGGTGTTCATTCACAACCTTGGCTACAGGATGAAAGGGAGCTTAAAAGACAAAGGCGAAAGCAGTCTAATAGGGAATCTGCACGGAGATCCAGGTTGCGAAAGCAGGCTGAATGTGATGAATTAGCTCAGCGTGCTGATGTTTTGAGTGAAGAAAATGCCTCTCTCCGTGCTGAACTAAGCAGGATCAAGAGTGAGCACGCTAAGGCACTTGCTGAGAATGCAGCCCTCAAGGTGAAACAGGGAGAGATACTGAGGAACGAGGAAATTGTGCCGGGCCAGAATGATCAGCTTGTGGAGCATGGTGTTCATTAG 1200 0.465 MSSSDVDKTLKEKEPKTPPVVTSQEQSSTATGTPAVNPEWANYQAYSPIPPPGYMASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGGLYAHPSMPPGSYPFSPYAMPSPNGMVDASGNTPGSSEADGKPHEAKEKLPIKRSKGSIGSLNMVTGKNNELSKTPGASANGIHSKSGESASEGSSEGSDENSHNDSQLKSGERQDSFEDEPSQNGSSAQAPQNGGLNTPHTVVNQTMSVVPMSVAGPIAAVAGPTTNLNIGMDYWGTPASSTIPAMHGKVPSTAVAGGMVNAGPRDGVHSQPWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLSEENASLRAELSRIKSEHAKALAENAALKVKQGEILRNEEIVPGQNDQLVEHGVH 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01930 399 Pfam Disordered region downstream of MFMR 137 274 - -
Vifa4g01930 399 Pfam bZIP transcription factor 307 369 IPR004827 GO:0003700|GO:0006355
Vifa4g01930 399 MobiDBLite consensus disorder prediction 210 231 - -
Vifa4g01930 399 MobiDBLite consensus disorder prediction 1 15 - -
Vifa4g01930 399 SMART brlzneu 307 371 IPR004827 GO:0003700|GO:0006355
Vifa4g01930 399 MobiDBLite consensus disorder prediction 301 316 - -
Vifa4g01930 399 CDD bZIP_plant_GBF1 312 363 IPR045314 GO:0003700|GO:0006355
Vifa4g01930 399 Pfam G-box binding protein MFMR 1 98 IPR012900 -
Vifa4g01930 399 Gene3D - 310 365 - -
Vifa4g01930 399 PANTHER G-BOX-BINDING FACTOR 3-RELATED 15 375 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vifa4g01930 399 MobiDBLite consensus disorder prediction 129 143 - -
Vifa4g01930 399 MobiDBLite consensus disorder prediction 113 231 - -
Vifa4g01930 399 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 314 329 IPR004827 GO:0003700|GO:0006355
Vifa4g01930 399 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 309 361 IPR004827 GO:0003700|GO:0006355
Vifa4g01930 399 MobiDBLite consensus disorder prediction 19 38 - -
Vifa4g01930 399 SUPERFAMILY Leucine zipper domain 310 363 IPR046347 GO:0003700|GO:0006355
Vifa4g01930 399 MobiDBLite consensus disorder prediction 1 38 - -
Vifa4g01930 399 MobiDBLite consensus disorder prediction 188 209 - -
Vifa4g01930 399 MobiDBLite consensus disorder prediction 289 331 - -
Vifa4g01930 399 Coils Coil 327 368 - -
Vifa4g01930 399 MobiDBLite consensus disorder prediction 148 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01930 Vifa-Chr4 561524155 561529491 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01930 1 373 bZIP Transcription Factor Family AT2G35530 65.435 3.06e-165 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa4g01930 MFMR_assoc 2.9e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01930 K09060 - gmx:778122 585.104