Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01924 ATGGAAATGCAAAATGTGATGCTCTTTTTGGTATTCTTATGGGCTGAACTTCATCTTATATCTTCATTTACTGATCCTCAAGATGTTTCTGCACTTAGATCTCTAAAAGAAACATGGAAAAACACACCACCAAGCTGGGACAAGTCAGATGACCCTTGTGGAGCACCATGGGAAGGAGTGACCTGCAACAGATCAAGGGTTACTTCATTGAGACTGTCAACCATGGGACTCAAGGGTACATTAGGTGGAGATATTGGTGGACTCACAGAATTAAGATCCTTGGACTTATCCTTTAATAAAGGTTTAATGGGTTCTATCTCTCCAGAATTAGGAGCCTTAAAAAACCTAAACATTCTGATTTTGGCTGGTTGCAGTTTCAGTGGCAATATTCCAGATGCATTAGGGGACCTTTCAGACCTATCTTTCTTGGCTTTAAATTCAAACAACTTCACTGGAAAAATACCTTCATCATTGGGCAAACTATCCAAACTTTATTGGTTGGACTTGGCAGATAATCAGCTAACAGGACCTCTCCCGGTTTCGACCTCCACATCCCCCGGCTTAGACCAACTTTTACATGCTAAGCATTTCCATTTCAATAAGAACCAGCTTTCTGGTTCCATTTCTCCCAAGCTTTTCAACTCTGACATGGTACTCATTCACATATTGTTAGATGGAAATGAATTAATCGGGAGTATACCTTCGACTATAGGACTAGTTCATACAGTTGAGGTTCTTCGGCTCGATAGAAATTTCTTGACAGGAGAAGTCCCTTCGAATCTCAACAAACTTAGTAACATCAATTTGATGAACTTAGCACACAACAAATTGTCTGGTCCTTTGCCGGACTTAACATCAATGGATACCCTAAATTATGTGGATCTTAGTAACAATTCCTTTGATCCATCAGAAGCTCCAACTTGGTTCTCATCTCTACCGCAACTCACCACACTTATTATGGAGTTTGGATCTCTTGAAGGTACTCTTCCATCAGAACTCTTCAGCCTTCCTCAAATACAACAAATAAAACTAAGACACAATGCATTGAACAATACACTTGAAATGGGAGACAACATTTGTCCTCAATTGCAGCTTGTGGATTTACAAGACAACAAGGTTGCATCGGTAACAGTGGGTTCACAGTACAAAAACACATTGATTCTCGTAGGAAATCCAGTATGCAGTACTGGTCTCCTCTCTAATACAAACGACTGCAACCTTCAGCAACAGCCGAAACAACCCTATTCAACTAGCTTGGCTAATTGCGGAGGAAGACCATGTCCACCAGATCAAAAACTCAGTCCACAAAGTTGCGAATGTGCATGTCCATATCAAGGAACATTTTATTTTAGGGGACCTTATTTTAGAGAACTCACTAATATAACTATTTTCCATTCACTTGAAATGAGCTTATGGGTGAAATTGAGTTTAACACCTGGTTCAGTTTCGTTACAAAACCCTTTCTTCAATGGTGATGATTATCTTCAAGTGCAACTCGCGCTCTTTCCACCGACAGGACAGTATTTTAACAGGTCAGAAGTTCAAAGAATCGGATTTTCATTGAGTAATCAAACGTACAAGCCTCCGCCTGAATTTGGACCCTATTACTTCATTGCATTTCCCTACTCTTTTCCAGATTCGCGCAGAGGAACTTCTCTCAGCAGATGTGCTATTATTTTGATAGCAAGTGGAAGTGCAGTTCTGATTCTGTGCTTTATAGGGCTAGCTATATATGCAATCCTGCAAAAGAAGCGCGCGGAGAAAGCTATTGGAATAAGTAGACCGTTTGCATCTTGGGCAACAAGTGTCAAGGATAGTGGAGGTGCACCACAATTGAAGGGAGCAAGAAGGTTCTCTTACGACGAACTCAAAAAGTGTACCGATAACTTCTCTGGAAGCAACGAGTTAGGCTTCGGTGGCTATGGCAAGGTGTACAAAGGAGTTTCCCCTGACGGAAAAATAGTTGCCATTAAAAGAGCTCAGCAAGGATCAATGCAAGGAGGTCTAGAGTTCAAGAATGAAATCGAATTGCTTTCAAGAGTTCATCACAAGAATCTTGTTAGCCTTGTTGGATTCTGCTTTGAACAAGGAGAACAGATGTTGGTTTATGAATTCATCTACAATGGAACACTTAGGGAGGGTTTGTCAGGGAAATCTGGTATTCAACTTGATTGGAAGAGGAGACTCCGTATCGCTCTCGGCTCAGCTAGAGGACTAGCATACTTACACGAACTTGCCAACCCTCCCATAATTCACAGAGACGTGAAGTCAACCAATATCTTGCTAGATGAAAATTTGACTGCAAAGGTTGCAGATTTTGGCCTGTCTAAGCTTGTATCAGACAGTGACAAAAGCCATGTCTCAACTCAGGTTAAAGGAACATTGGGCTATCTAGATCCAGAATATTACATGACTCAACAACTATCCGAAAAGAGTGACGTATACAGTTTCGGTGTAGTTATGCTTGAACTGATAACATCCAAGCAACCACTTGAAAGGGGTAAGTACATTGTTCGCGAGGTCCGAACCTTAATGAATGACAGGGATGAAGAGTACCATGGTTTAAGCGAAGTAATGGATCCATTGGTGAGAAACACAGCAAACCAGATAGGATTTGGCAGGTTCTTAGAGTTGGCAATGCAATGCGTCGAAGAATCAGCTTCAGACCGACCTACAATGAGTGAAGTTGTGAAAGCGTTAGAAACCATATTACAGAATGATGGTTTGAACACAAATTCTACTTCTGCTTCTTCATCTGCTACTGATTTTGGAGTGACTAAGGGTGCTGCAAAGAGACATCCTTACATTGATAATAGTTTTACTAAGAAGGATAGTGTTGATGAGAGTAATGCATTTGATTACAGTGGAGGGTACACACTTTCAACTAAAGTGGAACCTAAATAG 2904 0.4091 MEMQNVMLFLVFLWAELHLISSFTDPQDVSALRSLKETWKNTPPSWDKSDDPCGAPWEGVTCNRSRVTSLRLSTMGLKGTLGGDIGGLTELRSLDLSFNKGLMGSISPELGALKNLNILILAGCSFSGNIPDALGDLSDLSFLALNSNNFTGKIPSSLGKLSKLYWLDLADNQLTGPLPVSTSTSPGLDQLLHAKHFHFNKNQLSGSISPKLFNSDMVLIHILLDGNELIGSIPSTIGLVHTVEVLRLDRNFLTGEVPSNLNKLSNINLMNLAHNKLSGPLPDLTSMDTLNYVDLSNNSFDPSEAPTWFSSLPQLTTLIMEFGSLEGTLPSELFSLPQIQQIKLRHNALNNTLEMGDNICPQLQLVDLQDNKVASVTVGSQYKNTLILVGNPVCSTGLLSNTNDCNLQQQPKQPYSTSLANCGGRPCPPDQKLSPQSCECACPYQGTFYFRGPYFRELTNITIFHSLEMSLWVKLSLTPGSVSLQNPFFNGDDYLQVQLALFPPTGQYFNRSEVQRIGFSLSNQTYKPPPEFGPYYFIAFPYSFPDSRRGTSLSRCAIILIASGSAVLILCFIGLAIYAILQKKRAEKAIGISRPFASWATSVKDSGGAPQLKGARRFSYDELKKCTDNFSGSNELGFGGYGKVYKGVSPDGKIVAIKRAQQGSMQGGLEFKNEIELLSRVHHKNLVSLVGFCFEQGEQMLVYEFIYNGTLREGLSGKSGIQLDWKRRLRIALGSARGLAYLHELANPPIIHRDVKSTNILLDENLTAKVADFGLSKLVSDSDKSHVSTQVKGTLGYLDPEYYMTQQLSEKSDVYSFGVVMLELITSKQPLERGKYIVREVRTLMNDRDEEYHGLSEVMDPLVRNTANQIGFGRFLELAMQCVEESASDRPTMSEVVKALETILQNDGLNTNSTSASSSATDFGVTKGAAKRHPYIDNSFTKKDSVDESNAFDYSGGYTLSTKVEPK 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01924 967 Gene3D Transferase(Phosphotransferase) domain 1 706 924 - -
Vifa4g01924 967 FunFam Leucine-rich repeat family protein 27 183 - -
Vifa4g01924 967 Gene3D Phosphorylase Kinase; domain 1 602 705 - -
Vifa4g01924 967 SUPERFAMILY Protein kinase-like (PK-like) 616 911 IPR011009 -
Vifa4g01924 967 Gene3D Ribonuclease Inhibitor 183 285 IPR032675 -
Vifa4g01924 967 ProSiteProfiles Protein kinase domain profile. 630 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01924 967 SUPERFAMILY L domain-like 286 394 - -
Vifa4g01924 967 PANTHER RECEPTOR-LIKE PROTEIN 55 34 903 - -
Vifa4g01924 967 ProSitePatterns Protein kinases ATP-binding region signature. 636 658 IPR017441 GO:0005524
Vifa4g01924 967 FunFam Leucine-rich repeat protein kinase family protein 597 705 - -
Vifa4g01924 967 FunFam Predicted protein 186 405 - -
Vifa4g01924 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672|GO:0006468
Vifa4g01924 967 Pfam Protein tyrosine and serine/threonine kinase 634 900 IPR001245 GO:0004672|GO:0006468
Vifa4g01924 967 CDD STKc_IRAK 636 903 - -
Vifa4g01924 967 SUPERFAMILY L domain-like 26 300 - -
Vifa4g01924 967 SMART serkin_6 630 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01924 967 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Vifa4g01924 967 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 706 916 - -
Vifa4g01924 967 Gene3D Ribonuclease Inhibitor 286 397 IPR032675 -
Vifa4g01924 967 Gene3D Ribonuclease Inhibitor 25 182 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01924 Vifa-Chr4 560974982 560980240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01924 6 967 Receptor kinase-like Gene Family AT1G79620 67.170 0.0 1364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vifa4g01924 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01924 - - gmx:100792249 1592.79