Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01923 ATGACGCACAATGGCGCCCACGCCGTCGCCAGCTACGAAGGTGCTACGCTCCATTTCCGATCCGACCCCGACGATTCCGTTGCAATCGCACCTCTCACCGTTCCAACCATGTGGCCAGACCTTATTCAGAAATCCAAAGATGGAGGAATTGATGTCATTGAGACTTATGTTTTCTGGAACTTACACGAACCTGTTCGACGCCAGGTTCTGTTCTTTTTCATTGTCTTTCCACTTTCATATTGTTATTCTTCTGTCTTTTACATTGCAGTTTTCAGCAGCAGGTCTATATGTTCATCTCCGGATCGGTCCATACGCTTGTGCAGAATGGAATTACGGTGGTTTCCCTCTTTTGTATGGTTGTTTCTTGGATTCTACTGGGTAACTGCTGGTGGTCAGAGTTTGACAAGGGTTTCACCTCAGCTTTACTGGCTCTGTATCACATTTCTTGCTTTCGACGTTGCAATTGTTGTGATTTGTGTTACTGCTGCGTGTCTCATTGGAATTGCCGTTTGCTGTTTTCTTCCATGCATACTTGCTATTTTGTATGCAGTGACTGATCAGGAAGGGGCAACCAAGGAAGAGATTGACCTGTTGCCAAAATACAAGTTCAGAATAATAAAGGAACTTAAAAAAGAAGGTGATGCCCAAGAATCATCGAGAGGAGTGATGACGGAATGTGACAGTGGTTCAGCTTCTGAGCATATTATTGCCTTAGAAGATGCAGAATGTTGTATCTGCCTTTCGGCCTATGATGATGAAGCTGAACTTAGAGAACTTCCTTGCAATCACCATTTTCATTGCACATGCATTGACAAATGGCTGCTCATCAATGCCACCTGTCCTCTCTGCAAGTTTAACATTTTGAGCACTGATAACCTCCAAGAAGTTTGA 891 0.44 MTHNGAHAVASYEGATLHFRSDPDDSVAIAPLTVPTMWPDLIQKSKDGGIDVIETYVFWNLHEPVRRQVLFFFIVFPLSYCYSSVFYIAVFSSRSICSSPDRSIRLCRMELRWFPSFVWLFLGFYWVTAGGQSLTRVSPQLYWLCITFLAFDVAIVVICVTAACLIGIAVCCFLPCILAILYAVTDQEGATKEEIDLLPKYKFRIIKELKKEGDAQESSRGVMTECDSGSASEHIIALEDAECCICLSAYDDEAELRELPCNHHFHCTCIDKWLLINATCPLCKFNILSTDNLQEV 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01923 296 SMART ring_2 243 283 IPR001841 -
Vifa4g01923 296 SUPERFAMILY RING/U-box 233 291 - -
Vifa4g01923 296 SUPERFAMILY (Trans)glycosidases 32 69 IPR017853 -
Vifa4g01923 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 295 IPR013083 -
Vifa4g01923 296 Pfam Glycosyl hydrolases family 35 34 71 IPR031330 -
Vifa4g01923 296 PANTHER TARGET OF ERK KINASE MPK-1 113 290 - -
Vifa4g01923 296 Gene3D Glycosidases 12 81 - -
Vifa4g01923 296 ProSiteProfiles Zinc finger RING-type profile. 243 284 IPR001841 -
Vifa4g01923 296 Pfam Ring finger domain 242 284 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01923 Vifa-Chr4 546005799 546008144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01923 116 295 C3H Transcription Factor Family AT1G68070 54.645 1.29e-64 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01923 - - tpra:123891576 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01923 4 546005799 546008144 Vifa4g01923 4 546005799 546008144 ECH