Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01918 ATGGATCCCAGTTTCTTCTATACCATCTTATTGTCCTTATGTTTCTTTACTTTCCCTGCTTATTCAATTCACTTCCAAATTCCAAATTTTAATCCAAATGAAGTCAACATAATCTACCAAGGTTCTGCAGCACCAGTTGATGGAGAAGTTAACTTTAACATCAATGAAAATTATTCATGTCAAGTTGGATGGGCCATCTATCCCAAAAAGATCTTACTTTGGGACTCAAAAACTGGTCAACTCACTGACTTCACAACTCATTACACTTTTATCATAGACACTCAAAATAGATCTCCATATGGCCATGGACTTGCGTTTTTCTTGGTTCCTTTTGGATTTGAAATCCCACCTAATTCTTCTGGTGGATTCATGGGTCTATTTAACACCACAACAATGCTTTCATCATCTAGTAACCAAATTGTTCTTGTGGAGTTTGATTCTTACCCAAATAAAGAATTGGGTGAGACAACACAACATGTTGGAATCAACAATAATTCAATCGTTTCATCAGTATCAACACCTTGGAATGCTAGTTTACATAGTGGAGACACTGCTGAGGTAAGTATTAGCTACAATTCTACAACCAAGAACTTGACTGTATCTTGGAGATACAAAAGCACCTCTAATCCTCAAGAAAAAACTAGTCTTTCATATCAAATTGATTTAATGAAGGTCCTACCTGAATGGATTACTGTTGGATTCTCAGCTGCAACAGGCACTATTGCAGAAGTAAATAATCTTTTGTCATGGGAGTTTAACTCCACTTTGGACAAAAGTGATGATGGTAATACAAAAGAGACAAGATTAATTGTGATAGTAACAATCTCTTGTGGGGTTGTAATAGTAGTGGGAGCATTGGTAGCATATGTAGTACTCAAGAGGAAAAGAAAGAGAAGTGAAAAGCAAAAAGAAGAGGCTATGCATTTAAATTCAATGAATGATGACCTTGAAAGAGGAGCAGGACCAAGGAGGTTCAACTACAAAGAGCTTGATATTGCCACCAATAATTTCTCTAGAGATAGAAAGTTGGGTCAAGGTGGGTTTGGAGCTGTTTATAAAGGTTACTTTGTTGATTTAGATATACATGTTGCTGTGAAGAAAATATCGAGAGGGTCAAGACAAGGTAAGAAAGAGTATGTAACTGAAGTTAAAGTGATTAGTCAGCTGAGACATAGGAATCTTGTGAAGTTGTTGGGTTGGTGCCATGACAAAGGTGAGTTTCTTCTTGTTTATGAGTTCATGCCAAATGGTAGTCTTGATTCTCATTTATTTGGTAAGAGAACACCTCTTTCTTGGAGTGCAAGGCACAAAATAGCCCTTGGATTGGCTTCTGGTTTGCTTTATCTACATGAAGAATGGGAGAGGTGTGTGGTACATAGAGATATTAAATCAAGTAATGTTATGTTAGATTCTAGTTTCAATGTTAAGCTTGGTGATTTTGGGTTGGCTAAATTGATGGATCATGAACTTGGGCCTCAAACAACCGGTTTAGCCGGAACATTTGGCTATCTAGCTCCAGAATATGTGAGTACAGGTAGGGCTAGTAAAGAGTCAGATGTGTATAGTTTTGGGATAGTTGTGATGGAGATAACTTGTGGAAAGAAAGCTACTGAAGTTATTAAGGAAAAAAATGAAGAAAAGGGAATGATTGAGTGGGTTTGGGATCATTATGGAAGAGGAGAGCTACTTATGGCAATGGATGAGAATTTGAGAAAGGATTTTGATGAGAAACAAGTGGAGTGTTTGATGATTGTTGGATTATGGTGTGCTCATCCTGATGTGAATCTAAGACCATCCATTAGACAAGCAATTCAAGTGCTTAATTTTGAGGTTGCTTTGCCAAATCTTCCACCAAAAAGACCTGTTGCAACCTATCATGCTCCTACACCATCACTAAGCTCTGTTGAAGCTACTATAACCACAAGCCTTCAAGATGGTCGTTAA 1944 0.3745 MDPSFFYTILLSLCFFTFPAYSIHFQIPNFNPNEVNIIYQGSAAPVDGEVNFNINENYSCQVGWAIYPKKILLWDSKTGQLTDFTTHYTFIIDTQNRSPYGHGLAFFLVPFGFEIPPNSSGGFMGLFNTTTMLSSSSNQIVLVEFDSYPNKELGETTQHVGINNNSIVSSVSTPWNASLHSGDTAEVSISYNSTTKNLTVSWRYKSTSNPQEKTSLSYQIDLMKVLPEWITVGFSAATGTIAEVNNLLSWEFNSTLDKSDDGNTKETRLIVIVTISCGVVIVVGALVAYVVLKRKRKRSEKQKEEAMHLNSMNDDLERGAGPRRFNYKELDIATNNFSRDRKLGQGGFGAVYKGYFVDLDIHVAVKKISRGSRQGKKEYVTEVKVISQLRHRNLVKLLGWCHDKGEFLLVYEFMPNGSLDSHLFGKRTPLSWSARHKIALGLASGLLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHELGPQTTGLAGTFGYLAPEYVSTGRASKESDVYSFGIVVMEITCGKKATEVIKEKNEEKGMIEWVWDHYGRGELLMAMDENLRKDFDEKQVECLMIVGLWCAHPDVNLRPSIRQAIQVLNFEVALPNLPPKRPVATYHAPTPSLSSVEATITTSLQDGR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01918 647 Gene3D Phosphorylase Kinase; domain 1 322 413 - -
Vifa4g01918 647 SMART serkin_6 337 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01918 647 FunFam Lectin-domain containing receptor kinase A4.3 414 627 - -
Vifa4g01918 647 Pfam Protein kinase domain 338 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01918 647 Gene3D - 20 280 - -
Vifa4g01918 647 FunFam L-type lectin-domain containing receptor kinase IX.1 322 413 - -
Vifa4g01918 647 SUPERFAMILY Protein kinase-like (PK-like) 321 623 IPR011009 -
Vifa4g01918 647 ProSiteProfiles Protein kinase domain profile. 337 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01918 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Vifa4g01918 647 ProSitePatterns Protein kinases ATP-binding region signature. 343 367 IPR017441 GO:0005524
Vifa4g01918 647 Gene3D Transferase(Phosphotransferase) domain 1 414 628 - -
Vifa4g01918 647 PANTHER - 53 609 - -
Vifa4g01918 647 FunFam L-type lectin-domain containing receptor kinase IX.1 21 265 - -
Vifa4g01918 647 Pfam Legume lectin domain 23 265 IPR001220 GO:0030246
Vifa4g01918 647 CDD STKc_IRAK 343 608 - -
Vifa4g01918 647 SUPERFAMILY Concanavalin A-like lectins/glucanases 20 269 IPR013320 -
Vifa4g01918 647 CDD lectin_legume_LecRK_Arcelin_ConA 23 256 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01918 Vifa-Chr4 541320706 541322649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01918 8 647 Receptor kinase-like Gene Family AT5G10530 56.528 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa4g01918 Pkinase 6.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01918 - - cave:132172487 852.047