Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01914 ATGCCTCCACCGCCACTGCTGGTTCCTGAAGAGGAAGGGCAGAGCAACTCCTCAACGGTAGCATCTGCATCTCCACGATCCTTGGACTGTTTCTCCCAAACCGGGACTGGATTGAAAGAACGCAATTACCTTAGATTGTCCGATTGCTCATCGGTCGACAGTTCTGGTGTCCCAAGCTTGTCTGATGAGAAAAAGGTGAACCTGAATTTGAAAGCTACAGAGTTAAGGCTCGGCCTTCCTGGATCCCAGTCGCCTGAAAGGAATCTGGATCTTTTTTCTTTGAGCTCAACTAAGCTTGATGAGAAACCGCTGTTCCCTTTGCTTCCCACTAAAGATGGAATTTGCGTATTGTCCCAGAAGAATGTGGTTTCGGGAAACAAAAGAGGTTTCGCCGATACGATGGATGTGTTCCCTGAGGCGAAATATAATGTTAATGCGCGTGTAAACATACTGCTATCGTCTAGACCTTCTACAGCTCAACCTACTACAGTTAAAGATTTATCAAGCAAAGTGTTACAAGAGAGCTCTTGTGCAGCAAATGGAACCGGAGCTCCCATCAATGGCAGTGCACCGGCTTCTAAAGCACAAGTTGTCGGTTGGCCTCCTATTAGATCATTTAGGAAAAACTCATTGGCTACCACTTCTAAGAACAATGACGAAGTGGATGGTAAACCAGGTCCAGCTGCACTCTTTGTGAAGGTTAGCATGGATGGCGCTCCTTATCTTAGGAAGGTCGATCTAAGAAACTATACAACTTACCAGGAACTGTCTTCCGACCTTGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGCGCTTCTCATGGAGCTCAAGGAAGAGAAATGTTGAGTGAGAGCAAGTTGAAGGACTTCCTGCATGGTTCTGAATATGTAGTCACTTATGAAGATAAAGATGGTGACTGGATGCTTGTTGGAGATGTACCATGGGACATGTTCACTGACACATGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCAATTGGCTTAGCTCCAAGGGCTATGGAAAAATCCAAGAGCAGGAGCTAG 1050 0.4562 MPPPPLLVPEEEGQSNSSTVASASPRSLDCFSQTGTGLKERNYLRLSDCSSVDSSGVPSLSDEKKVNLNLKATELRLGLPGSQSPERNLDLFSLSSTKLDEKPLFPLLPTKDGICVLSQKNVVSGNKRGFADTMDVFPEAKYNVNARVNILLSSRPSTAQPTTVKDLSSKVLQESSCAANGTGAPINGSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLGQCASHGAQGREMLSESKLKDFLHGSEYVVTYEDKDGDWMLVGDVPWDMFTDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01914 349 Gene3D - 226 343 - -
Vifa4g01914 349 MobiDBLite consensus disorder prediction 11 31 - -
Vifa4g01914 349 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 68 336 IPR003311 GO:0005634|GO:0006355
Vifa4g01914 349 MobiDBLite consensus disorder prediction 1 31 - -
Vifa4g01914 349 ProSiteProfiles PB1 domain profile. 229 333 IPR000270 GO:0005515
Vifa4g01914 349 FunFam Auxin-responsive protein 224 341 - -
Vifa4g01914 349 SUPERFAMILY CAD & PB1 domains 227 330 - -
Vifa4g01914 349 Pfam AUX/IAA family 73 340 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01914 Vifa-Chr4 538693440 538695494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01914 233 339 B3 DNA Binding Superfamily AT4G23980 30.841 2.05e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa4g01914 AUX_IAA 6.2e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01914 K14484 - gmx:100500373 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01094 1 178696652 178699164 Vifa4g01914 4 538693440 538695494 PCT