Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01900 ATGACAGATTACCGTTCACTGCCGACAATGAATAATACTTGGACAGATTACATGGAAGCTTTCATGAGCACCACCGACCTTTCTTCTATCTGGCTTCCAACAGCAAACTCCGCCGCATCAACCACAGCACCAGGACCCGACACAACCAAACCTCCACCACAACAACAGCCTCTCTTCAACCAAGAAACTCTCCAACACCGTCTTCAAGCTTTAATCGAAGATGCAAAAGAGAACTGGACTTACGCCATCTTCTGGCAAACTTCCTACGACTACTCCACAAACAGACAGCTCCTCGGTTGGGGAGACGGTTATTACAAAGGCGAAGATGACAAAGAAAAAGTCAAAAAGGTTATCTTACCTGAACAACAAGCTCACCGAAATAAAGTCCTCCGCGAACTTAACGCCTTAATATCTGGCTCTTCTGGCTCAGATGATGTCGTTGACGAAGATGTCACCGACACCGAGTGGTTCTTTCTCACGTCAATGACACACTCCTTCGTCAACGGCACAGGTTTAGTGAGTCAGGCTTACTTTAATTCTTCCCCAGTATGGATCACTGATGATAGGCTTTCCATGTCCACATGTGAAAGAACCTGTGCAGCACATGTCCACGGCCTTCAGACTTTGGTATATATACCGGCACCCTCTTCAAACGGTGTCGTTGAGCTTGCATCTATGGAGATAATTCCACATAGCGCTAATATAATGGAGAAGGTTCGTTTTCTGTTTGATTTCAATAATCCAGAAGCACGAACCTTGCCGTTGAATTCCTCCGACAACAATCACGATCCTTCTTCCATATGGCTGGATATCTCCGGCTCCGGTGCCACTGAAATTAGAGACTCCGTCAACACTAGTAGTGCCGTTAGTGTAACTGCTTCAGCAACTGCAACTATTACTAAAAATTCGCAGTTTGAAATTCACGGTGGTTCTTCTACTCTACCGGAAACATCCACCGCCGTTAATATTTCAACTTCTCAGCGTCATAATCAGAATCAGAATCAGAACCGGAGCTTCTTTCCAAGGGAACTAAATTTTTCAAGTTCTTTGAAACCTGAATCCGGCGAGTTTCTGAACTTCGGTGAGAGTAAGAAGAGTTCTTACAGCTCTGCCAATGGTAATTTCTTTTCCGGTGGTCCGTCACCGTTCACCGCCAACGACGAGAACAGAAAAAAAACGTCTCCAGTGTCTAGAAGTAGTATCGACGACGGAATTCTTTCATTCACTTCCGGCAAACTGTTACATGCTTCAGCTATAAAGTCCGGCGGAGATTCCGATCATTCAGATCTGGAAGTTTCCGTGGTGAAGGAAACTATCAGCAGCAGAGTAATCGAACCGGAGAAACGGCCACGAAAGCGAGGTAGAAAACCGGCAAACGGAAGAGAAGAGCCTTTGAACCACGTGGAAGCAGAGAGACAGAGACGAGAGAAACTGAATCAGAGATTCTACGCGTTGCGCGCTGTGGTTCCGAATGTTTCTAAAATGGACAAAGCTTCGCTTCTCGGCGACGCGATTTCTTACATAAACGAATTGAAATCGAAACTACAAGGGCTTGAATCATCAAAAGGTGAATTAGAGAAAGAATTAGATACAACCAAAAAGGAACTAGAAATTGCGACCAAAAAACCAATTCTGTTGAATGAAGAAGAAAAAGAGAAAACAAACAACAACAAGTCTAAGTTAATTGATTTGGACATAGATGTGAAAATCATGGGATGGGATGCAATGATTAGGATTCAGTGTAGCAAAAAGAATCACCCTGCGGCGAAATTAATGGCGGCGTTAAAAGAATTGGATCTTGATGTGAATCATGCTAGTGTTTCTGTTGTTAATGACTTGATGATTCAACAGGCTTCTATTAACATGGGAAGTAGATTTTACACTCAGGAACAGCTTTTATCTATTCTTTCTTCCAAAATTGGTGATACACAATGA 1935 0.4346 MTDYRSLPTMNNTWTDYMEAFMSTTDLSSIWLPTANSAASTTAPGPDTTKPPPQQQPLFNQETLQHRLQALIEDAKENWTYAIFWQTSYDYSTNRQLLGWGDGYYKGEDDKEKVKKVILPEQQAHRNKVLRELNALISGSSGSDDVVDEDVTDTEWFFLTSMTHSFVNGTGLVSQAYFNSSPVWITDDRLSMSTCERTCAAHVHGLQTLVYIPAPSSNGVVELASMEIIPHSANIMEKVRFLFDFNNPEARTLPLNSSDNNHDPSSIWLDISGSGATEIRDSVNTSSAVSVTASATATITKNSQFEIHGGSSTLPETSTAVNISTSQRHNQNQNQNRSFFPRELNFSSSLKPESGEFLNFGESKKSSYSSANGNFFSGGPSPFTANDENRKKTSPVSRSSIDDGILSFTSGKLLHASAIKSGGDSDHSDLEVSVVKETISSRVIEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLESSKGELEKELDTTKKELEIATKKPILLNEEEKEKTNNNKSKLIDLDIDVKIMGWDAMIRIQCSKKNHPAAKLMAALKELDLDVNHASVSVVNDLMIQQASINMGSRFYTQEQLLSILSSKIGDTQ 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01900 644 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 465 531 IPR036638 GO:0046983
Vifa4g01900 644 MobiDBLite consensus disorder prediction 378 401 - -
Vifa4g01900 644 Pfam Helix-loop-helix DNA-binding domain 466 511 IPR011598 GO:0046983
Vifa4g01900 644 CDD bHLH_AtAIB_like 459 535 - -
Vifa4g01900 644 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 462 511 IPR011598 GO:0046983
Vifa4g01900 644 SMART finulus 468 517 IPR011598 GO:0046983
Vifa4g01900 644 Coils Coil 508 542 - -
Vifa4g01900 644 MobiDBLite consensus disorder prediction 441 472 - -
Vifa4g01900 644 FunFam Transcription factor bHLH13 455 529 - -
Vifa4g01900 644 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 64 243 IPR025610 -
Vifa4g01900 644 MobiDBLite consensus disorder prediction 37 57 - -
Vifa4g01900 644 Gene3D - 454 542 IPR036638 GO:0046983
Vifa4g01900 644 PANTHER MYC 40 638 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01900 Vifa-Chr4 535110717 535112651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01900 1 641 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 49.774 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g01900 bHLH-MYC_N 8e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01900 K13422 - gmx:100790854 671.003