Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01899 ATGGCTTCCGATGGATTCACCGATAAGAACATCGTGTTCAGAAAACTGAAGTTGAAATCTGAGAATAAGATGTGTTTCGATTGCAATACGAAGAATCCGACATGGGCGTCTGTTACGTATGGGATCTTTCTCTGCATTGATTGTTCTGCTGTTCATAGAAGTCTCGGTGTTCATATCAGTTTCGTGAGATCTACAAACTTAGACTCATGGACTCCTGAGCAACTAAAAATAATGAGCTTCGGAGGAAACAGTCGTGCACAGACTTTCTTTAAGCAACATGGTTGGACTGATGGCGGTAAAATAGAAGCAAAGTATACATCTAGAGCTGCAGAGTTATACAGGCAGATTCTTTCAAAGGAAGTAGCTAAAAGTATGGTTGAGGAGGGAGGCTTGACCCCATCACCTATTGTTTCTCAGTCTTCTAATGGACTTCCTGAGATCAAGATCGATGAGGTACTGAAAGAAAGCACTATGGAGAAGGCAGAAAAGCCTGAGAGCACATCTTCACCTAGAGCTTCACATTCAGTATCTAATAATTTGAAGAAGCCTATTGGTGGGAAAAAGCCTGTGAAGGGTGGGGGACTTGGTGCTCGTAAGCTCAATAGAAAGTCAAGTGAGAATCTCTATGAGCAGAAGCCTGAAGAACCACCTTCTCCAGTCCCATCCACAACAAACAACAATGTGTCTGCCAGGTCATCTCTGAGTTCTCGTTTTGAGTATGTAGATAATGTTCAATCACCTGAGTTGGATTCTGGAGGTTCAAATTCATTCAATCATGTTTCTGCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATAGTGGTTTTCCCAAGAAATTTGGGTCAAGCACCTCAAAAGTGCAAATTGAGGAAACTGATGAAGCAAGAAAGAAGTTCTCAAATGCGAAATCTATTTCGTCATCTCAATATTTTGGAGACCAGAACAAGGCGAGAGATGCAGAGACTCGGGCTACTTTGTCAAAATTTTCAGGTTCGTCCTCCATCTCCAGTGCTGAACTTTTTGGTGACAATGGAGACTCCACCATTGATCTTGCTGCCAGCGATCTCATCAATCGATTATCCTTTCAGGCACAACAGGATATCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGGAAAAAACTCAGCTCCTTGGCCTCCTCCTTGATGACAGATCTTCAGGACCGGATCCTCTAA 1203 0.4281 MASDGFTDKNIVFRKLKLKSENKMCFDCNTKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKIMSFGGNSRAQTFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMVEEGGLTPSPIVSQSSNGLPEIKIDEVLKESTMEKAEKPESTSSPRASHSVSNNLKKPIGGKKPVKGGGLGARKLNRKSSENLYEQKPEEPPSPVPSTTNNNVSARSSLSSRFEYVDNVQSPELDSGGSNSFNHVSAPKSSSFFADFGMDSGFPKKFGSSTSKVQIEETDEARKKFSNAKSISSSQYFGDQNKARDAETRATLSKFSGSSSISSAELFGDNGDSTIDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLMTDLQDRIL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01899 400 MobiDBLite consensus disorder prediction 295 319 - -
Vifa4g01899 400 MobiDBLite consensus disorder prediction 303 317 - -
Vifa4g01899 400 Gene3D Arf GTPase activating protein 3 135 IPR038508 -
Vifa4g01899 400 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Vifa4g01899 400 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Vifa4g01899 400 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 400 - -
Vifa4g01899 400 CDD ArfGap_ArfGap2_3_like 8 123 - -
Vifa4g01899 400 MobiDBLite consensus disorder prediction 221 260 - -
Vifa4g01899 400 Pfam Putative GTPase activating protein for Arf 13 106 IPR001164 GO:0005096
Vifa4g01899 400 MobiDBLite consensus disorder prediction 157 260 - -
Vifa4g01899 400 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Vifa4g01899 400 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vifa4g01899 400 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Vifa4g01899 400 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Vifa4g01899 400 SUPERFAMILY ArfGap/RecO-like zinc finger 12 126 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01899 Vifa-Chr4 534349012 534353155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01899 13 91 C2H2 Transcription Factor Family AT3G07940 46.250 3.82e-19 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01899 K12493 K11855 gmx:100785169 611.298