Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01898 ATGGCTTCCGACGGCTTCACCGACAAGAACGCCGTGTTCAGAAAACTCAAAACCAAGTCCGAAAACAAGTCGTGTTTCGATTGTAATGCGAAGAATCCGACCTGGGCGTCAGTACCGTATGGGATCTTCCTTTGCATTGATTGCTCGGCAGTTCATCGGAGTCTCGGCGTTCACATCAGCTTCGTGAGATCTACAAACTTAGACTCATGGACTCCTGAGCAACTTAAAATGATGAGCTTTGGCGGAAACGGTAGGGCAAATGTTTTCTTTCGACAGCATGGTTGGAACGGCGGTGGTAAAGTAGAGGCAAAGTATACATCCAGAGCTGCAGAGTTGTATAAGCAATTGCTTTCAAAAGAAGTTGCTAAAAGTATGTCTGAGGAGGCTGCCTTGTCTCCATCCCCTGCAGCCTCTTCTCAGTCTGCCCAAGAGGATAATGGACTTCCTGATGTCAAGACAAGTGAAGTCCCAATGGAAAAGACTTTGGAGAAGCCAGAAAAGACTGAGAGCACTTCTTCACCTAGAGCTTCATATTCTGCAGTTTCAAATAATTTGAAGAAGCCTATTGGAGCAAAAAAAACTGGTAAGAGTGGGGGGCTTGGAGCCCGTAAGCTCACTAGAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCCGAAGAAGCACCTACGCCAGTTTCATCATCGACAAACAACAACTTGCCTTCTGGGCCACCTCCAACATCTCGGTTTGAGTATACAGAAGATGTCCAAACATCTGAGTTAAATTCTGGAGGTCACGTGTCTGCACCAAAGTCATCTAACTTCTTTTCAGACTTTGGAATGGGTAGTGGATTTCCAAAGAAGTCTGGGCCAAGCTCCTCAAAAGTGCAAATCCAGGAAACTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAGTCAATTTCTTCATCCCAATTTTTTGGAGACCACAGCAAGGCTGATGTGGATGCTCAAGCTACTTTATCAAAGTTTTCAGGTTCATCTGCTATATCCAGTGCTGATCTTTTTGGTGACTCAAGAGATAACAATGTCGATCTTGCTGCTAGTGACCTTATAAATCGAATATCTTTCCAGGCACAACAGGATATTTCTTCCCTTAAGAACATTGCCGGAGAAACTGGGAAAAAGCTCACCTCCTTGGCATCCTCATTGATGACAGATCTTCAAGACCGAATCCTCTAA 1200 0.4467 MASDGFTDKNAVFRKLKTKSENKSCFDCNAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKMMSFGGNGRANVFFRQHGWNGGGKVEAKYTSRAAELYKQLLSKEVAKSMSEEAALSPSPAASSQSAQEDNGLPDVKTSEVPMEKTLEKPEKTESTSSPRASYSAVSNNLKKPIGAKKTGKSGGLGARKLTRKPSESLYEQKPEEAPTPVSSSTNNNLPSGPPPTSRFEYTEDVQTSELNSGGHVSAPKSSNFFSDFGMGSGFPKKSGPSSSKVQIQETDEARKKFSNAKSISSSQFFGDHSKADVDAQATLSKFSGSSAISSADLFGDSRDNNVDLAASDLINRISFQAQQDISSLKNIAGETGKKLTSLASSLMTDLQDRIL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01898 399 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Vifa4g01898 399 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Vifa4g01898 399 MobiDBLite consensus disorder prediction 127 245 - -
Vifa4g01898 399 MobiDBLite consensus disorder prediction 131 148 - -
Vifa4g01898 399 Pfam Putative GTPase activating protein for Arf 12 107 IPR001164 GO:0005096
Vifa4g01898 399 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vifa4g01898 399 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Vifa4g01898 399 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Vifa4g01898 399 CDD ArfGap_ArfGap2_3_like 8 123 - -
Vifa4g01898 399 MobiDBLite consensus disorder prediction 156 170 - -
Vifa4g01898 399 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Vifa4g01898 399 MobiDBLite consensus disorder prediction 221 245 - -
Vifa4g01898 399 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vifa4g01898 399 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 399 - -
Vifa4g01898 399 MobiDBLite consensus disorder prediction 275 301 - -
Vifa4g01898 399 Gene3D Arf GTPase activating protein 2 139 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01898 Vifa-Chr4 533758240 533763678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01898 13 90 C2H2 Transcription Factor Family AT4G21160 48.101 1.69e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01898 K12493 K11855 gmx:100785169 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01898 4 533758240 533763678 Vifa4g01898 4 533758240 533763678 ECH