Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01896 ATGGCAGGTTTGGCTCCGGAAGGTTCGCAATTTGATACGAAGCAGTATGACACTAAGATGAATGAATTGCTTTCCACTGATGGACAAGAACTCATCACCACTTATGATGAAGTCTTTGGTACTTTTGATCATATGGGATTGCAAGAAAATCTCCTGAGAGGCATATATGCTTATGGTTTTGAGAAGCCTTCTGCAATCCACCAAAGGGGGATTGTTCCTTTCTGCAAAGGTCTAGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACTGCAACCTTTTGTTCTGGAAATTTGCAACAGCTTGATTATGGTTTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAACTTGCACAGCAGATTGAGAAGGTTATGAGAGCTCTTGGTAATTACCTTGGTGTTAAAGTTCATGCTTGTGTTGGTGGCACTAGCGTTCGTGAGGATCAGCGTATTCTACAAACTGGTGTCCATACTGTTGTTGGCACTCCTGGACGTGTGTTTGACATGCTGCGAAGACAGTCTCTTCGGTCCGACATCATTAAAATGTTCGTTTTGGATGAGGCTGATGAGATGCTTTCTCGTGGTTTCAAGGACCAGATCTATGATATCTTCCAGCTGCTGCCACCTAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCAGAAGCCTTGGAGATCACCAGGAAGTTCATGAATAAGCCAGTGAGAATTCTGGTAAAGCGTGGTGAATTGACCCTTGAGGGTATTAAGCAGTTTTATGTGAATGTTGACAAGGAAGAATGGAAACTAGAGACATTATGTGACCTTTATGAGACTCTGGCCATCACTCAGAGTGTCATTTTTGTCAACACAAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAGGCAGGGACCATACAGTCTCAGCCACCCATGGAGACATGGACCAAAACACTCGTGACATCATCATGCGTGAATTCCGCTCCGGTTCTTCCAGAATTCTCATTACCACCGACCTCTTGGCTCGTGGTATTGATGTTCAGCAAGTGTCTTTGGTGATAAACTATGATCTTCCTACCCATCCGAAAACCATCAACCCAACCTCTATCAGTTCCGCTTCAAACCAATCGGTCCGCACACTAGCTGTCACAAACTTCCATTTCAGAACTTCCTATGTCTCCATAACGGCTCCTTTCGCCAATAACCGACCTCACACTTCTTCAATTCCAACCGCGACTCACCAACTCTGTGACCCTTCAAACTTCCTCTCCCTTCATCCACAAACCCATTCTTCTATCACTTCACTATCACCACCCATATCCACCACCACTCACATCATAGAAACCGATGTCGACCATCGTCTTTGTCAGCCGGCAAACGACCGCCATCGCTAA 1389 0.4586 MAGLAPEGSQFDTKQYDTKMNELLSTDGQELITTYDEVFGTFDHMGLQENLLRGIYAYGFEKPSAIHQRGIVPFCKGLDVIQQAQSGTGKTATFCSGNLQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGNYLGVKVHACVGGTSVREDQRILQTGVHTVVGTPGRVFDMLRRQSLRSDIIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRGELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRILITTDLLARGIDVQQVSLVINYDLPTHPKTINPTSISSASNQSVRTLAVTNFHFRTSYVSITAPFANNRPHTSSIPTATHQLCDPSNFLSLHPQTHSSITSLSPPISTTTHIIETDVDHRLCQPANDRHR 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01896 462 SMART ultradead3 59 256 IPR014001 -
Vifa4g01896 462 PANTHER RNA HELICASE 30 362 - -
Vifa4g01896 462 Pfam DEAD/DEAH box helicase 67 226 IPR011545 GO:0003676|GO:0005524
Vifa4g01896 462 CDD SF2_C_DEAD 253 362 - -
Vifa4g01896 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 361 IPR027417 -
Vifa4g01896 462 CDD DEADc_EIF4A 45 242 - -
Vifa4g01896 462 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Vifa4g01896 462 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Vifa4g01896 462 SMART helicmild6 293 382 IPR001650 -
Vifa4g01896 462 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 415 IPR001650 -
Vifa4g01896 462 Gene3D - 249 376 IPR027417 -
Vifa4g01896 462 Pfam Helicase conserved C-terminal domain 266 362 IPR001650 -
Vifa4g01896 462 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Vifa4g01896 462 Gene3D - 30 248 IPR027417 -
Vifa4g01896 462 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01896 Vifa-Chr4 533361841 533363229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01896 1 361 Eukaryotic Initiation Factors Gene Family AT3G13920 89.227 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01896 K03257 - cit:102621232 671.003