Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01895 ATGGCAGGTTTGGCTCCGGAAGGTTCGCAATTTGATACGAAGCAGTATGACACTAAGATGAATGAATTGCTTTCCACTGATGGACAAGAACTCATCACCACTTATGATGAAGTCTTTGGTACTTTTGATCATATGGGATTGCAAGAAAATCTCCTGAGAGGCATATATGCTTATGGTTTTGAGAAGCCTTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTAGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACTGCAACCTTTTGTTCTGGAATTTTGCAACAGCTTGATTATGGTTTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAACTTGCACAGCATATTGAGAAGGTTATGAGAGCTCTTGGTTATTACCTTGGTGTTAAAGTTCATGCTTGTGTTGGTGGCACTAGCGTTCGTGAGGATCAGCGTATTCTACAAACTGGTGTCCATACTGTTGTTGGCACTCCTGGACGTGTGTTTGACATGCTGCGAAGACAGTCTCTTCGGTCCGACATCATTAAAATGTTCGTTTTGGATGAGGCTGATGAGATGCTTTCTCGTGGTTTCAAGGACCAGATCTATGATATCTTCCAGCTGCTGCCACCTAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCAGAAGCCTTGGAGATCACCAGGAAGTTCATGAATAAGCCAGTGAGAATTCTGGTAAAGCGTGATGAATTGACCCTTGAGGGTATTAAGCAGTTTTATGTGAATGTTGACAAGGAAGAATGGAAACTAGAGACATTATGTGACCTTTATGAGACTCTGGCCATCACTCAGAGTGTCATTTTTGTCAACACAAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAGGCAGGGACCATACAGTCTCAGCCACCCATGGAGACATGGACCAAAACACTCGTGACATCATCATGCGTGAATTCTGCTCCGGTTCTTCCAGAATTCTCATTACCACCGACCTCTTGGCTCGTGGTATTGATGTTCAGCAAGTGTCTTTGGTGATAAACTATGATCTTCCTACCCAACCGAAAACCATCAACCCAACCTCTATCAGTTCCGCTTCAAACCAATCGGTCCGCACACTAACTGTCACAAACTTCCATTTCAGAACTTCCTATGTCTCCATAACGGCTCCTTTCGCCAATAACCGACCTCACACTTCTTCAATTCCAACCGCGACTCACCAACTCTGTGACCCTTCAAACTTCCTCTCCCTTCATCCACAAACCCATTCTTCTATCACTTCACTATCACCACCCATATCCACCACCACTCACATCATAGAAACCGATGTCGACCACCGTCTCTATCAGCCGGCAAACGACCGCCATCGCTAA 1389 0.4557 MAGLAPEGSQFDTKQYDTKMNELLSTDGQELITTYDEVFGTFDHMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQHIEKVMRALGYYLGVKVHACVGGTSVREDQRILQTGVHTVVGTPGRVFDMLRRQSLRSDIIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFCSGSSRILITTDLLARGIDVQQVSLVINYDLPTQPKTINPTSISSASNQSVRTLTVTNFHFRTSYVSITAPFANNRPHTSSIPTATHQLCDPSNFLSLHPQTHSSITSLSPPISTTTHIIETDVDHRLYQPANDRHR 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01895 462 Pfam Helicase conserved C-terminal domain 266 362 IPR001650 -
Vifa4g01895 462 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 415 IPR001650 -
Vifa4g01895 462 CDD SF2_C_DEAD 253 362 - -
Vifa4g01895 462 Gene3D - 249 372 IPR027417 -
Vifa4g01895 462 CDD DEADc_EIF4A 45 242 - -
Vifa4g01895 462 SMART ultradead3 59 256 IPR014001 -
Vifa4g01895 462 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Vifa4g01895 462 SMART helicmild6 293 382 IPR001650 -
Vifa4g01895 462 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 39 360 - -
Vifa4g01895 462 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Vifa4g01895 462 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Vifa4g01895 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 362 IPR027417 -
Vifa4g01895 462 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Vifa4g01895 462 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Vifa4g01895 462 Gene3D - 30 248 IPR027417 -
Vifa4g01895 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 244 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01895 Vifa-Chr4 533351808 533353196 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01895 1 362 Eukaryotic Initiation Factors Gene Family AT3G13920 89.256 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01895 K03257 - cit:102621232 673.7