Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01894 ATGGCAGGTTTGGCTCCGGAAGGTTCGCAATTTGATACGAAGCAGTATGACACTAAGATGAATGAATTGCTTTCCACTGATGGACAAGAACTCATCACCACTTATGATGAAGTCTTTGGTACTTTTGATCATATGGGATTGCAAGAAAATCTCCTGAGAGGCATATATGCTTATGGTTTTGAGAAGCCTTCTGCAATCCAGCAAATGGGGATTGTTCCTTTCTGCAAAGGTCTAGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACTGCAACCTTTTGTTCTGGAATTTTGCAACAGCTTGATTATGGTTTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAACTTGCACAGCAGATTGAGAAGGTTATGAGAGCTCTTGGTAATTACCTTGGTGTTAAAGTTCATGCTTGTGTTGGTGGCACTAGCGTTCGTGAGGATCAGCGTATTCTACAAACTGGTGTCCATACTGTTGTTGGCACTCCTGGACGTGTGTTTGACATGCTGCGAAGATAG 528 0.4394 MAGLAPEGSQFDTKQYDTKMNELLSTDGQELITTYDEVFGTFDHMGLQENLLRGIYAYGFEKPSAIQQMGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGNYLGVKVHACVGGTSVREDQRILQTGVHTVVGTPGRVFDMLRR 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01894 175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 175 IPR027417 -
Vifa4g01894 175 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Vifa4g01894 175 Coils Coil 173 175 - -
Vifa4g01894 175 Pfam DEAD/DEAH box helicase 65 173 IPR011545 GO:0003676|GO:0005524
Vifa4g01894 175 Gene3D - 9 175 IPR027417 -
Vifa4g01894 175 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 175 IPR014001 -
Vifa4g01894 175 PANTHER RNA HELICASE 27 175 - -
Vifa4g01894 175 SMART ultradead3 59 175 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01894 Vifa-Chr4 533342557 533343084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01894 1 175 Eukaryotic Initiation Factors Gene Family AT3G13920 83.523 2.17e-104 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01894 K03257 - cit:102621232 326.635